miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18238 3' -57.4 NC_004680.1 + 42436 0.66 0.615022
Target:  5'- --cAUCCGCCgCUACAgGGGUgucgcaugaGGCGg -3'
miRNA:   3'- cuuUGGGCGGaGAUGUgCCCG---------UCGCa -5'
18238 3' -57.4 NC_004680.1 + 11056 0.66 0.605247
Target:  5'- ---uCCCGCCgucgauggcauccugCUGC-CGGGCGGCc- -3'
miRNA:   3'- cuuuGGGCGGa--------------GAUGuGCCCGUCGca -5'
18238 3' -57.4 NC_004680.1 + 33731 0.66 0.604162
Target:  5'- aGAAACCCccguacugGCCUUgcgggaagACACGGGCAuggGCa- -3'
miRNA:   3'- -CUUUGGG--------CGGAGa-------UGUGCCCGU---CGca -5'
18238 3' -57.4 NC_004680.1 + 7857 0.66 0.604162
Target:  5'- cGAAGCuuGCCgucCUGCGCGaaCGGCGa -3'
miRNA:   3'- -CUUUGggCGGa--GAUGUGCccGUCGCa -5'
18238 3' -57.4 NC_004680.1 + 28011 0.66 0.593325
Target:  5'- aAAGuuCGCCUcCUACGCGGGCgauuuGGCu- -3'
miRNA:   3'- cUUUggGCGGA-GAUGUGCCCG-----UCGca -5'
18238 3' -57.4 NC_004680.1 + 59290 0.66 0.571755
Target:  5'- -cGACCCaugcGCCUCgGCGCGGGacuugGGCGc -3'
miRNA:   3'- cuUUGGG----CGGAGaUGUGCCCg----UCGCa -5'
18238 3' -57.4 NC_004680.1 + 38447 0.67 0.539781
Target:  5'- -cGGCUccaaCGCCUC---ACGGGCAGCGg -3'
miRNA:   3'- cuUUGG----GCGGAGaugUGCCCGUCGCa -5'
18238 3' -57.4 NC_004680.1 + 16863 0.68 0.487969
Target:  5'- uGAACCuCGCC-CUGCACGcGGgAGCu- -3'
miRNA:   3'- cUUUGG-GCGGaGAUGUGC-CCgUCGca -5'
18238 3' -57.4 NC_004680.1 + 45324 0.69 0.401263
Target:  5'- ---uCCCGuCCUCUACAgGGGCaacugGGUGUu -3'
miRNA:   3'- cuuuGGGC-GGAGAUGUgCCCG-----UCGCA- -5'
18238 3' -57.4 NC_004680.1 + 23563 0.69 0.398543
Target:  5'- cGggGCCUGCCccucggcaggaUCUcccauccaccagucACGCGGGCGGCc- -3'
miRNA:   3'- -CuuUGGGCGG-----------AGA--------------UGUGCCCGUCGca -5'
18238 3' -57.4 NC_004680.1 + 5789 0.7 0.392245
Target:  5'- --uAUCCGCgCUCUGCACGuguacGGCGGCa- -3'
miRNA:   3'- cuuUGGGCG-GAGAUGUGC-----CCGUCGca -5'
18238 3' -57.4 NC_004680.1 + 14810 0.71 0.340984
Target:  5'- cGggGCuuGCCacuccaggggCUACAuCGGGUAGCGg -3'
miRNA:   3'- -CuuUGggCGGa---------GAUGU-GCCCGUCGCa -5'
18238 3' -57.4 NC_004680.1 + 42313 0.72 0.294747
Target:  5'- --cACCCGUCUUcGCGCGGGCAcGCu- -3'
miRNA:   3'- cuuUGGGCGGAGaUGUGCCCGU-CGca -5'
18238 3' -57.4 NC_004680.1 + 55080 1.07 0.000914
Target:  5'- cGAAACCCGCCUCUACACGGGCAGCGUc -3'
miRNA:   3'- -CUUUGGGCGGAGAUGUGCCCGUCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.