miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18238 5' -54.8 NC_004680.1 + 27360 0.68 0.637482
Target:  5'- aGGUUCUcGGCggcaGCGUCGccGCCGCCg -3'
miRNA:   3'- aCUAGGAcCUGg---CGUAGCuuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 27950 0.71 0.467297
Target:  5'- uUGGUCUUGGGCCGgGUgauucgucCGAGGagauCCGCCg -3'
miRNA:   3'- -ACUAGGACCUGGCgUA--------GCUUC----GGUGG- -5'
18238 5' -54.8 NC_004680.1 + 32094 0.7 0.518579
Target:  5'- ----gUUGGAUCGCAUCGuGGCgACCa -3'
miRNA:   3'- acuagGACCUGGCGUAGCuUCGgUGG- -5'
18238 5' -54.8 NC_004680.1 + 33128 0.66 0.734704
Target:  5'- ------aGGGCCGCAUC---GCCACCa -3'
miRNA:   3'- acuaggaCCUGGCGUAGcuuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 34025 0.66 0.734704
Target:  5'- cGGUCCa--ACCGaGUCGuuGCCGCCg -3'
miRNA:   3'- aCUAGGaccUGGCgUAGCuuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 37839 0.67 0.717792
Target:  5'- gGAgCUgugGGGCCGCAcuccguguguggagaUCGAaguGGUCACCg -3'
miRNA:   3'- aCUaGGa--CCUGGCGU---------------AGCU---UCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 37916 0.68 0.648443
Target:  5'- gUGcgCCUGGACUGuCGcCGAacuGGUCACUg -3'
miRNA:   3'- -ACuaGGACCUGGC-GUaGCU---UCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 41641 0.73 0.373404
Target:  5'- cGAUUCUGcGGCgGCGaCGAagaaAGCCACCu -3'
miRNA:   3'- aCUAGGAC-CUGgCGUaGCU----UCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 43723 0.67 0.681195
Target:  5'- aGuUCCUGGACCGCGaagcgcUGGAGUUgaACCu -3'
miRNA:   3'- aCuAGGACCUGGCGUa-----GCUUCGG--UGG- -5'
18238 5' -54.8 NC_004680.1 + 43839 0.68 0.626516
Target:  5'- gUGAUCa--GACaCGUAUCGAAGCgACUa -3'
miRNA:   3'- -ACUAGgacCUG-GCGUAGCUUCGgUGG- -5'
18238 5' -54.8 NC_004680.1 + 49562 0.7 0.497775
Target:  5'- gUGAUUUgGGuuuCCGCGUUGAGGCCcacuACCa -3'
miRNA:   3'- -ACUAGGaCCu--GGCGUAGCUUCGG----UGG- -5'
18238 5' -54.8 NC_004680.1 + 53104 0.66 0.745145
Target:  5'- gGAUcgCCgcgugGGACaGCcUCGAuaaAGCCACCa -3'
miRNA:   3'- aCUA--GGa----CCUGgCGuAGCU---UCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 54180 0.7 0.508132
Target:  5'- gGAUCC-GGAgacaacauCCGaAUCGAAGUCACCc -3'
miRNA:   3'- aCUAGGaCCU--------GGCgUAGCUUCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 55081 0.72 0.429174
Target:  5'- aUGAUCCUGG-CCGCccgacguuucauucCGAcccGCCACCg -3'
miRNA:   3'- -ACUAGGACCuGGCGua------------GCUu--CGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 55114 1.11 0.00092
Target:  5'- cUGAUCCUGGACCGCAUCGAAGCCACCc -3'
miRNA:   3'- -ACUAGGACCUGGCGUAGCUUCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 56217 0.68 0.626516
Target:  5'- aGAUCgccaaaCUGGacgaccccaGCCGCGUCGAAGUucucauccuCACCg -3'
miRNA:   3'- aCUAG------GACC---------UGGCGUAGCUUCG---------GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.