Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18238 | 5' | -54.8 | NC_004680.1 | + | 56217 | 0.68 | 0.626516 |
Target: 5'- aGAUCgccaaaCUGGacgaccccaGCCGCGUCGAAGUucucauccuCACCg -3' miRNA: 3'- aCUAG------GACC---------UGGCGUAGCUUCG---------GUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 43839 | 0.68 | 0.626516 |
Target: 5'- gUGAUCa--GACaCGUAUCGAAGCgACUa -3' miRNA: 3'- -ACUAGgacCUG-GCGUAGCUUCGgUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 8786 | 0.69 | 0.592596 |
Target: 5'- aUGGUCCUGccggcggaGACC-CGUCccggcgcggucaaGggGCCGCCg -3' miRNA: 3'- -ACUAGGAC--------CUGGcGUAG-------------CuuCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 19912 | 0.69 | 0.575196 |
Target: 5'- aGAUCCgggucaGGAUCaggcaaaGCAUCGGgccggaagaacaaccAGCCACCa -3' miRNA: 3'- aCUAGGa-----CCUGG-------CGUAGCU---------------UCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 32094 | 0.7 | 0.518579 |
Target: 5'- ----gUUGGAUCGCAUCGuGGCgACCa -3' miRNA: 3'- acuagGACCUGGCGUAGCuUCGgUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 7955 | 0.7 | 0.508132 |
Target: 5'- -cAUCCUcaGGGuuGCAUcCGAuguGCCACCa -3' miRNA: 3'- acUAGGA--CCUggCGUA-GCUu--CGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 54180 | 0.7 | 0.508132 |
Target: 5'- gGAUCC-GGAgacaacauCCGaAUCGAAGUCACCc -3' miRNA: 3'- aCUAGGaCCU--------GGCgUAGCUUCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 49562 | 0.7 | 0.497775 |
Target: 5'- gUGAUUUgGGuuuCCGCGUUGAGGCCcacuACCa -3' miRNA: 3'- -ACUAGGaCCu--GGCGUAGCUUCGG----UGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 27950 | 0.71 | 0.467297 |
Target: 5'- uUGGUCUUGGGCCGgGUgauucgucCGAGGagauCCGCCg -3' miRNA: 3'- -ACUAGGACCUGGCgUA--------GCUUC----GGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 55081 | 0.72 | 0.429174 |
Target: 5'- aUGAUCCUGG-CCGCccgacguuucauucCGAcccGCCACCg -3' miRNA: 3'- -ACUAGGACCuGGCGua------------GCUu--CGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 11181 | 0.72 | 0.418756 |
Target: 5'- --cUCCUGG--CGCGUCGggGUCAUCg -3' miRNA: 3'- acuAGGACCugGCGUAGCuuCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 13232 | 0.73 | 0.382204 |
Target: 5'- cGGUCCggucggGGACCGCc---AGGCCGCCc -3' miRNA: 3'- aCUAGGa-----CCUGGCGuagcUUCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 41641 | 0.73 | 0.373404 |
Target: 5'- cGAUUCUGcGGCgGCGaCGAagaaAGCCACCu -3' miRNA: 3'- aCUAGGAC-CUGgCGUaGCU----UCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 2847 | 0.73 | 0.364742 |
Target: 5'- gUGAUgCUGuaguGACCGguUCGccGCCGCCg -3' miRNA: 3'- -ACUAgGAC----CUGGCguAGCuuCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 3806 | 0.73 | 0.356221 |
Target: 5'- cGAcUCUUGGGCCGC-UUGGAcaaccgguGCCACCg -3' miRNA: 3'- aCU-AGGACCUGGCGuAGCUU--------CGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 55114 | 1.11 | 0.00092 |
Target: 5'- cUGAUCCUGGACCGCAUCGAAGCCACCc -3' miRNA: 3'- -ACUAGGACCUGGCGUAGCUUCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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