miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 3' -57.1 NC_004680.1 + 2867 0.66 0.608746
Target:  5'- cCUGCGCCGGgaCGACGaCUGCacaaAGCa -3'
miRNA:   3'- -GAUGCGGCUagGUUGC-GACGgg--UCGg -5'
18239 3' -57.1 NC_004680.1 + 38673 0.66 0.608746
Target:  5'- --cUGCCGcUCCAAC-CgGgCCAGCCa -3'
miRNA:   3'- gauGCGGCuAGGUUGcGaCgGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 12154 0.67 0.59796
Target:  5'- -aAC-CCG-UCCGGCGCUGCC--GCCc -3'
miRNA:   3'- gaUGcGGCuAGGUUGCGACGGguCGG- -5'
18239 3' -57.1 NC_004680.1 + 8312 0.67 0.59796
Target:  5'- -aACGCUGcUUCGACGCcuggucGUCCAGCUu -3'
miRNA:   3'- gaUGCGGCuAGGUUGCGa-----CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 53009 0.67 0.596882
Target:  5'- -aACGCCGAUgaauugcCCAGCGaUGUCgGGUCg -3'
miRNA:   3'- gaUGCGGCUA-------GGUUGCgACGGgUCGG- -5'
18239 3' -57.1 NC_004680.1 + 12887 0.67 0.587201
Target:  5'- --cCGCCGc-CCAAgGCcagGUCCAGCCc -3'
miRNA:   3'- gauGCGGCuaGGUUgCGa--CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 20751 0.67 0.587201
Target:  5'- --cCGCCGAUCgGGC-CUGUUCcGCCg -3'
miRNA:   3'- gauGCGGCUAGgUUGcGACGGGuCGG- -5'
18239 3' -57.1 NC_004680.1 + 12940 0.67 0.587201
Target:  5'- -cGgGUCGAugUCCuuGCGCUGCugggaagccuggCCAGCCa -3'
miRNA:   3'- gaUgCGGCU--AGGu-UGCGACG------------GGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 58903 0.67 0.576478
Target:  5'- aCUGCGCCGcaaugCCAcGCGC-GCCUAaagucuGCCg -3'
miRNA:   3'- -GAUGCGGCua---GGU-UGCGaCGGGU------CGG- -5'
18239 3' -57.1 NC_004680.1 + 12420 0.67 0.5658
Target:  5'- -gGCGCCuaacCCAGCcccGCUGCCCA-CCa -3'
miRNA:   3'- gaUGCGGcua-GGUUG---CGACGGGUcGG- -5'
18239 3' -57.1 NC_004680.1 + 16644 0.67 0.5658
Target:  5'- --cUGUCGAUCCGACuGCUGgCgCGGCg -3'
miRNA:   3'- gauGCGGCUAGGUUG-CGACgG-GUCGg -5'
18239 3' -57.1 NC_004680.1 + 3311 0.67 0.5658
Target:  5'- ---aGCCGAcuggUUC-GCGCUGUCCGGCa -3'
miRNA:   3'- gaugCGGCU----AGGuUGCGACGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 35624 0.67 0.555174
Target:  5'- -gGCGCCaugCCAaagACGCagaacgGCCCAGCg -3'
miRNA:   3'- gaUGCGGcuaGGU---UGCGa-----CGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 29218 0.67 0.544607
Target:  5'- uCUAguCGCCGAagccguUCCGGgGUUGCCgCGGCg -3'
miRNA:   3'- -GAU--GCGGCU------AGGUUgCGACGG-GUCGg -5'
18239 3' -57.1 NC_004680.1 + 14243 0.67 0.544607
Target:  5'- --gUGCCGAUggUCAAUGUUGgugaCCAGCCg -3'
miRNA:   3'- gauGCGGCUA--GGUUGCGACg---GGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 52195 0.67 0.544607
Target:  5'- gCUGCGCCGGcaagCCGACGa-GCCaggaGGCg -3'
miRNA:   3'- -GAUGCGGCUa---GGUUGCgaCGGg---UCGg -5'
18239 3' -57.1 NC_004680.1 + 52721 0.67 0.544607
Target:  5'- gCU-CGCCGAuucugcgcUCCAAaauuaaGCUGCCaaaugCGGCCg -3'
miRNA:   3'- -GAuGCGGCU--------AGGUUg-----CGACGG-----GUCGG- -5'
18239 3' -57.1 NC_004680.1 + 10895 0.67 0.543553
Target:  5'- gCUGCaCUGAUCCc-CGCUGCgcccuucUCAGCCg -3'
miRNA:   3'- -GAUGcGGCUAGGuuGCGACG-------GGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 28394 0.68 0.523678
Target:  5'- -aACGCauCGAaacCCAcgGCGCUGCCCuGGCUg -3'
miRNA:   3'- gaUGCG--GCUa--GGU--UGCGACGGG-UCGG- -5'
18239 3' -57.1 NC_004680.1 + 9835 0.68 0.523678
Target:  5'- gCUGCGUCGAaggCUGGCGCggUGgCUGGCCg -3'
miRNA:   3'- -GAUGCGGCUa--GGUUGCG--ACgGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.