miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 5' -53.8 NC_004680.1 + 16920 0.66 0.806567
Target:  5'- aCCGGUACaCGccaGGCGUGGAAgUGGACg -3'
miRNA:   3'- -GGCCGUG-GCuc-UUGCGUUUUgGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 33781 0.66 0.806567
Target:  5'- aCGGUcggGCCGGGAcaGCGguGAcgguUCGGGCa -3'
miRNA:   3'- gGCCG---UGGCUCU--UGCguUUu---GGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 57238 0.66 0.806567
Target:  5'- gCGGCGCCGGGGAauccgugccauuCGuCGAAcacgagaaugcaGCCgGGACg -3'
miRNA:   3'- gGCCGUGGCUCUU------------GC-GUUU------------UGG-CCUG- -5'
18239 5' -53.8 NC_004680.1 + 49973 0.67 0.797012
Target:  5'- gUCGcCGCCGAGAuCGaCAGAGCCcucggaGGACu -3'
miRNA:   3'- -GGCcGUGGCUCUuGC-GUUUUGG------CCUG- -5'
18239 5' -53.8 NC_004680.1 + 38305 0.67 0.794112
Target:  5'- gCCGGCACCGcAGGcuggcguuuucuucACGCAAcGCCu--- -3'
miRNA:   3'- -GGCCGUGGC-UCU--------------UGCGUUuUGGccug -5'
18239 5' -53.8 NC_004680.1 + 52011 0.67 0.787287
Target:  5'- uUGGuCGCCGAaguuGAGCGUcu--CCGGGCg -3'
miRNA:   3'- gGCC-GUGGCU----CUUGCGuuuuGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 23080 0.67 0.787287
Target:  5'- aCUGGCGCCGcug--GCAcGACCGGGg -3'
miRNA:   3'- -GGCCGUGGCucuugCGUuUUGGCCUg -5'
18239 5' -53.8 NC_004680.1 + 30875 0.67 0.787287
Target:  5'- uCCGGuCGCCGGuGAucCGCuccAAGCCGG-Cg -3'
miRNA:   3'- -GGCC-GUGGCU-CUu-GCGu--UUUGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 19515 0.67 0.787287
Target:  5'- aCCGcGCACCcauguGGugGCGuugaacuuACCGGGCu -3'
miRNA:   3'- -GGC-CGUGGcu---CUugCGUuu------UGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 1662 0.67 0.777401
Target:  5'- gUGGuCACUGAGAuUGCGAcgGGCCGG-Ca -3'
miRNA:   3'- gGCC-GUGGCUCUuGCGUU--UUGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 27542 0.67 0.767367
Target:  5'- uCCcGCGCCaGGcAGCGCGGGACCcGGCg -3'
miRNA:   3'- -GGcCGUGGcUC-UUGCGUUUUGGcCUG- -5'
18239 5' -53.8 NC_004680.1 + 12302 0.67 0.766356
Target:  5'- aCCGGaaccgcuCGCgGGGAACGCu--GCCgcGGACg -3'
miRNA:   3'- -GGCC-------GUGgCUCUUGCGuuuUGG--CCUG- -5'
18239 5' -53.8 NC_004680.1 + 49858 0.67 0.75617
Target:  5'- uUCaGCGCCGAcaucggcGGACGUuaaaccugGAAACUGGACa -3'
miRNA:   3'- -GGcCGUGGCU-------CUUGCG--------UUUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 51907 0.68 0.73648
Target:  5'- gCaGCACCGAGAGCauuggcuauuGCGAAcACCGcGGCc -3'
miRNA:   3'- gGcCGUGGCUCUUG----------CGUUU-UGGC-CUG- -5'
18239 5' -53.8 NC_004680.1 + 21447 0.68 0.73648
Target:  5'- uCC-GCAUgGAGAACGCAGGcuCCGG-Cg -3'
miRNA:   3'- -GGcCGUGgCUCUUGCGUUUu-GGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 43554 0.68 0.73648
Target:  5'- -gGGCgGCCGGGAACGCu--GCCGcuGCu -3'
miRNA:   3'- ggCCG-UGGCUCUUGCGuuuUGGCc-UG- -5'
18239 5' -53.8 NC_004680.1 + 5920 0.68 0.73648
Target:  5'- gCCGaGCGCCGc-AGCGCucacACCGGAg -3'
miRNA:   3'- -GGC-CGUGGCucUUGCGuuu-UGGCCUg -5'
18239 5' -53.8 NC_004680.1 + 28382 0.68 0.73648
Target:  5'- aCCGGUGgCGuGAACGCAucgAAACCcacGGCg -3'
miRNA:   3'- -GGCCGUgGCuCUUGCGU---UUUGGc--CUG- -5'
18239 5' -53.8 NC_004680.1 + 11102 0.68 0.725962
Target:  5'- cCCGGCGCCcaagcAGAACGCcgcGGCCGuuCg -3'
miRNA:   3'- -GGCCGUGGc----UCUUGCGuu-UUGGCcuG- -5'
18239 5' -53.8 NC_004680.1 + 10017 0.68 0.725962
Target:  5'- gCCGGCAUCGAcguCGCu--GCCGuGAUg -3'
miRNA:   3'- -GGCCGUGGCUcuuGCGuuuUGGC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.