miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18240 3' -55.2 NC_004680.1 + 56341 1.09 0.001466
Target:  5'- cGUCGACGACGACGACGAGGUUGCCGAc -3'
miRNA:   3'- -CAGCUGCUGCUGCUGCUCCAACGGCU- -5'
18240 3' -55.2 NC_004680.1 + 25707 0.84 0.082863
Target:  5'- -gCGuCGGCGACGGCGGGGaUGCCGAg -3'
miRNA:   3'- caGCuGCUGCUGCUGCUCCaACGGCU- -5'
18240 3' -55.2 NC_004680.1 + 23275 0.75 0.297773
Target:  5'- uUCGACGACgguGACGugGAGGUguCCGGu -3'
miRNA:   3'- cAGCUGCUG---CUGCugCUCCAacGGCU- -5'
18240 3' -55.2 NC_004680.1 + 27271 0.74 0.335904
Target:  5'- -gCGGCGGCGGCGACGcuGccGCCGAg -3'
miRNA:   3'- caGCUGCUGCUGCUGCucCaaCGGCU- -5'
18240 3' -55.2 NC_004680.1 + 11127 0.73 0.385321
Target:  5'- aUCGACGGCGGgagacauCGACGGGGccgggggGCCGGc -3'
miRNA:   3'- cAGCUGCUGCU-------GCUGCUCCaa-----CGGCU- -5'
18240 3' -55.2 NC_004680.1 + 47245 0.72 0.450811
Target:  5'- uGUCGACGACGAUGG-GGGGUgaGUCGu -3'
miRNA:   3'- -CAGCUGCUGCUGCUgCUCCAa-CGGCu -5'
18240 3' -55.2 NC_004680.1 + 21411 0.71 0.490288
Target:  5'- -aCGACGACGAucCGGCGAauGGggGCCu- -3'
miRNA:   3'- caGCUGCUGCU--GCUGCU--CCaaCGGcu -5'
18240 3' -55.2 NC_004680.1 + 5892 0.7 0.562853
Target:  5'- -cCGAUGACGuugcuGCGGCGcuuGGaUUGCCGAg -3'
miRNA:   3'- caGCUGCUGC-----UGCUGCu--CC-AACGGCU- -5'
18240 3' -55.2 NC_004680.1 + 36501 0.69 0.573488
Target:  5'- uGUUGGCGAUGACGGaGAuGUUcGCCGAc -3'
miRNA:   3'- -CAGCUGCUGCUGCUgCUcCAA-CGGCU- -5'
18240 3' -55.2 NC_004680.1 + 19552 0.69 0.584169
Target:  5'- gGUCGAgggUGAUGAUGGCGuuGUcGCCGAa -3'
miRNA:   3'- -CAGCU---GCUGCUGCUGCucCAaCGGCU- -5'
18240 3' -55.2 NC_004680.1 + 33315 0.69 0.605637
Target:  5'- gGUUGugGAUGGCGGCccgguagucguuGAGGacGCCGGg -3'
miRNA:   3'- -CAGCugCUGCUGCUG------------CUCCaaCGGCU- -5'
18240 3' -55.2 NC_004680.1 + 28343 0.69 0.627193
Target:  5'- uUCGACGGCGcgggcgguguCGGCGucGggGCCGAu -3'
miRNA:   3'- cAGCUGCUGCu---------GCUGCucCaaCGGCU- -5'
18240 3' -55.2 NC_004680.1 + 58562 0.68 0.637982
Target:  5'- uGUCuGCGugGuCGACGAGGcuggGCCa- -3'
miRNA:   3'- -CAGcUGCugCuGCUGCUCCaa--CGGcu -5'
18240 3' -55.2 NC_004680.1 + 16264 0.68 0.637982
Target:  5'- uUCGAUGuuguACGGCGcCGAGGcUGUCGGa -3'
miRNA:   3'- cAGCUGC----UGCUGCuGCUCCaACGGCU- -5'
18240 3' -55.2 NC_004680.1 + 50050 0.68 0.648765
Target:  5'- uGUCGAucuCGGCGGCGACGuGGgccUCGAa -3'
miRNA:   3'- -CAGCU---GCUGCUGCUGCuCCaacGGCU- -5'
18240 3' -55.2 NC_004680.1 + 12571 0.68 0.663836
Target:  5'- aUCGGCaugGACGGCGGCGGugcgcucggaauggcGGUgcagGCCGGc -3'
miRNA:   3'- cAGCUG---CUGCUGCUGCU---------------CCAa---CGGCU- -5'
18240 3' -55.2 NC_004680.1 + 42692 0.68 0.680989
Target:  5'- -cCG-CGGCGACGGUGGGGUgcaGUCGAa -3'
miRNA:   3'- caGCuGCUGCUGCUGCUCCAa--CGGCU- -5'
18240 3' -55.2 NC_004680.1 + 19253 0.67 0.702265
Target:  5'- aUCGACGACGGCGggcuauccgGCGAcguguuguuucuGGUgGCCGc -3'
miRNA:   3'- cAGCUGCUGCUGC---------UGCU------------CCAaCGGCu -5'
18240 3' -55.2 NC_004680.1 + 26269 0.67 0.71281
Target:  5'- -cUGAUGGCGACGcGgGAGGU-GUCGAu -3'
miRNA:   3'- caGCUGCUGCUGC-UgCUCCAaCGGCU- -5'
18240 3' -55.2 NC_004680.1 + 34476 0.67 0.717007
Target:  5'- aGUCGGCGAugcUGACGAucgcccacgugcagcCGGGGgaGCUGGg -3'
miRNA:   3'- -CAGCUGCU---GCUGCU---------------GCUCCaaCGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.