miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18240 5' -58.7 NC_004680.1 + 56375 1.1 0.000444
Target:  5'- gUGUCCGCGCUCCUCGACGCCACCAACa -3'
miRNA:   3'- -ACAGGCGCGAGGAGCUGCGGUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 53108 0.76 0.1292
Target:  5'- cG-CCGCGUgggacagCCUCGAUaaaGCCACCAACa -3'
miRNA:   3'- aCaGGCGCGa------GGAGCUG---CGGUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 20801 0.72 0.236957
Target:  5'- --cCCGaacUUCCUCGACGCUGCCGGCg -3'
miRNA:   3'- acaGGCgc-GAGGAGCUGCGGUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 51562 0.7 0.318643
Target:  5'- aGUaugUGCGCUCCUCGG-GCCAguuCCAGCc -3'
miRNA:   3'- aCAg--GCGCGAGGAGCUgCGGU---GGUUG- -5'
18240 5' -58.7 NC_004680.1 + 16792 0.7 0.350211
Target:  5'- gGUUCGCcCUUCUCGAUcgcggGCaCACCAACa -3'
miRNA:   3'- aCAGGCGcGAGGAGCUG-----CG-GUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 51668 0.7 0.353488
Target:  5'- gGUCCGCGCauaCCUCGGugaugcacgaaugacCGCCGCauCGGCu -3'
miRNA:   3'- aCAGGCGCGa--GGAGCU---------------GCGGUG--GUUG- -5'
18240 5' -58.7 NC_004680.1 + 10198 0.69 0.358443
Target:  5'- gUGUUggcgaUGCGUUCCugcaaaUCGcCGCCACCGGCa -3'
miRNA:   3'- -ACAG-----GCGCGAGG------AGCuGCGGUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 24804 0.69 0.38394
Target:  5'- gUGUCCGgGauuUCUUCGACuaCCGCCAAUg -3'
miRNA:   3'- -ACAGGCgCg--AGGAGCUGc-GGUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 17785 0.68 0.407894
Target:  5'- cGUUCGUgaagaacugggucaGUUCCUCaauccCGCCACCAACa -3'
miRNA:   3'- aCAGGCG--------------CGAGGAGcu---GCGGUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 19851 0.68 0.410612
Target:  5'- -aUCUGaCGCcCC-CGACGCCuCCAACg -3'
miRNA:   3'- acAGGC-GCGaGGaGCUGCGGuGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 21412 0.68 0.419756
Target:  5'- aGcCCGCGCggUCC-C-ACGCCACCAccGCg -3'
miRNA:   3'- aCaGGCGCG--AGGaGcUGCGGUGGU--UG- -5'
18240 5' -58.7 NC_004680.1 + 19236 0.68 0.429021
Target:  5'- -aUCCGgcgacguguUGUUUCUgGugGCCGCCAGCg -3'
miRNA:   3'- acAGGC---------GCGAGGAgCugCGGUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 39716 0.68 0.447907
Target:  5'- cUG-CgGCGCUCCgugCGGCGCUcCCuGCg -3'
miRNA:   3'- -ACaGgCGCGAGGa--GCUGCGGuGGuUG- -5'
18240 5' -58.7 NC_004680.1 + 31493 0.67 0.457521
Target:  5'- gUGaCCGUGCUcCCUCcACGCgGCCAc- -3'
miRNA:   3'- -ACaGGCGCGA-GGAGcUGCGgUGGUug -5'
18240 5' -58.7 NC_004680.1 + 43109 0.67 0.467244
Target:  5'- gGUCgGCGUUCacgCUCGGacagGCCGCCGAa -3'
miRNA:   3'- aCAGgCGCGAG---GAGCUg---CGGUGGUUg -5'
18240 5' -58.7 NC_004680.1 + 39920 0.67 0.477074
Target:  5'- cUG-CgGCGCUCCgugCGGCGCucuCugCGGCg -3'
miRNA:   3'- -ACaGgCGCGAGGa--GCUGCG---GugGUUG- -5'
18240 5' -58.7 NC_004680.1 + 5657 0.67 0.487004
Target:  5'- gUGUCCGCGCUggucagCUUCGAC-CCggACgAACg -3'
miRNA:   3'- -ACAGGCGCGA------GGAGCUGcGG--UGgUUG- -5'
18240 5' -58.7 NC_004680.1 + 48451 0.67 0.487004
Target:  5'- --aCCGCGaCUCCUCGugGaaCC-CCAAg -3'
miRNA:   3'- acaGGCGC-GAGGAGCugC--GGuGGUUg -5'
18240 5' -58.7 NC_004680.1 + 2774 0.67 0.497031
Target:  5'- cGUCCGUGCUUUgugcagUCGuCGUC-CCGGCg -3'
miRNA:   3'- aCAGGCGCGAGG------AGCuGCGGuGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 39957 0.67 0.497031
Target:  5'- aGUgCgGCGCUCCaugCGGCGCucuCugCGGCg -3'
miRNA:   3'- aCA-GgCGCGAGGa--GCUGCG---GugGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.