miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18242 3' -52.9 NC_004680.1 + 49934 0.66 0.88833
Target:  5'- gAUUUCCGcGAcGGUucgcUCGACGAuuucgaGGCCCa -3'
miRNA:   3'- gUAGGGGC-CUaCCA----AGCUGCU------UUGGG- -5'
18242 3' -52.9 NC_004680.1 + 12445 0.66 0.88833
Target:  5'- --aCCaCCGG-UGGUggCGGCG--GCCCg -3'
miRNA:   3'- guaGG-GGCCuACCAa-GCUGCuuUGGG- -5'
18242 3' -52.9 NC_004680.1 + 6491 0.66 0.88833
Target:  5'- -cUCgUCGGAUGGUUUGgguaacACGGuuCCCc -3'
miRNA:   3'- guAGgGGCCUACCAAGC------UGCUuuGGG- -5'
18242 3' -52.9 NC_004680.1 + 11891 0.66 0.880898
Target:  5'- -cUgCCCGGG-GGUUgcaGACGgcGCCCc -3'
miRNA:   3'- guAgGGGCCUaCCAAg--CUGCuuUGGG- -5'
18242 3' -52.9 NC_004680.1 + 11129 0.66 0.865279
Target:  5'- cCAUCgaCGGcgGGagacaUCGACGggGCCg -3'
miRNA:   3'- -GUAGggGCCuaCCa----AGCUGCuuUGGg -5'
18242 3' -52.9 NC_004680.1 + 17719 0.66 0.865279
Target:  5'- uGUCCCCgaGGAUGGg--GAUGuucaacGCCCa -3'
miRNA:   3'- gUAGGGG--CCUACCaagCUGCuu----UGGG- -5'
18242 3' -52.9 NC_004680.1 + 1812 0.66 0.857104
Target:  5'- gAUCCgUGGGgcugGGaUUCGACGAucGCCg -3'
miRNA:   3'- gUAGGgGCCUa---CC-AAGCUGCUu-UGGg -5'
18242 3' -52.9 NC_004680.1 + 34276 0.66 0.853768
Target:  5'- cCAUCCCCGGcagggcgcuuuuuUGcGUUCuGGCGGGugUCa -3'
miRNA:   3'- -GUAGGGGCCu------------AC-CAAG-CUGCUUugGG- -5'
18242 3' -52.9 NC_004680.1 + 12223 0.68 0.807241
Target:  5'- -uUCCCCGcGAgcgguuccgguggcgUGGUUCcggugucgguGACGAAcugGCCCg -3'
miRNA:   3'- guAGGGGC-CU---------------ACCAAG----------CUGCUU---UGGG- -5'
18242 3' -52.9 NC_004680.1 + 28181 0.68 0.78402
Target:  5'- -uUCCgCGGccGG-UCGugGAcACCCg -3'
miRNA:   3'- guAGGgGCCuaCCaAGCugCUuUGGG- -5'
18242 3' -52.9 NC_004680.1 + 44458 0.68 0.77407
Target:  5'- uGUCCCacuacuGGAUGGgugUCGACGGcaugcuugagcaGGCCg -3'
miRNA:   3'- gUAGGGg-----CCUACCa--AGCUGCU------------UUGGg -5'
18242 3' -52.9 NC_004680.1 + 18168 0.68 0.763974
Target:  5'- aGUCCCCGG-UGGaUUUGaauGCGuauGCCCc -3'
miRNA:   3'- gUAGGGGCCuACC-AAGC---UGCuu-UGGG- -5'
18242 3' -52.9 NC_004680.1 + 29873 0.68 0.757851
Target:  5'- -cUCCCCGGAaucaccgaacaauacUGGUggggcaGGgGAGACCUg -3'
miRNA:   3'- guAGGGGCCU---------------ACCAag----CUgCUUUGGG- -5'
18242 3' -52.9 NC_004680.1 + 26619 0.68 0.753743
Target:  5'- cCAUCCCCGuuc---UCGGCGGAAUCCu -3'
miRNA:   3'- -GUAGGGGCcuaccaAGCUGCUUUGGG- -5'
18242 3' -52.9 NC_004680.1 + 59379 0.69 0.732923
Target:  5'- --cCCCCGGggGGgUCuGCGcgGCCCc -3'
miRNA:   3'- guaGGGGCCuaCCaAGcUGCuuUGGG- -5'
18242 3' -52.9 NC_004680.1 + 34656 0.69 0.711701
Target:  5'- cCAUCCCCGG------CGACGgcACCCa -3'
miRNA:   3'- -GUAGGGGCCuaccaaGCUGCuuUGGG- -5'
18242 3' -52.9 NC_004680.1 + 33688 0.69 0.700967
Target:  5'- cCAUCCCUGaGcgGGguugUCGACGuagGGCCa -3'
miRNA:   3'- -GUAGGGGC-CuaCCa---AGCUGCu--UUGGg -5'
18242 3' -52.9 NC_004680.1 + 23245 0.7 0.690168
Target:  5'- uCGUCgCCGGuguUGGUgccCGugG-AGCCCg -3'
miRNA:   3'- -GUAGgGGCCu--ACCAa--GCugCuUUGGG- -5'
18242 3' -52.9 NC_004680.1 + 19189 0.72 0.527175
Target:  5'- --aCgUCGGAUGGUUCGGC-AAAUCCg -3'
miRNA:   3'- guaGgGGCCUACCAAGCUGcUUUGGG- -5'
18242 3' -52.9 NC_004680.1 + 10976 0.75 0.389404
Target:  5'- cCGUUCCgGGAcUGGUUCGGCaGcGACCCu -3'
miRNA:   3'- -GUAGGGgCCU-ACCAAGCUG-CuUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.