miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18242 5' -55.3 NC_004680.1 + 33404 0.66 0.724387
Target:  5'- gCGGGaggCCCCGAuCUCGgagugcaGGUCUCg -3'
miRNA:   3'- aGCUCaa-GGGGCUuGAGUag-----CCGGAG- -5'
18242 5' -55.3 NC_004680.1 + 33562 0.67 0.681611
Target:  5'- aCGGGcgCCCgccgugggGAACUCcUCGGCCUg -3'
miRNA:   3'- aGCUCaaGGGg-------CUUGAGuAGCCGGAg -5'
18242 5' -55.3 NC_004680.1 + 18952 0.67 0.649002
Target:  5'- ----aUUCCCCGAACUUGUUGGgCUUu -3'
miRNA:   3'- agcucAAGGGGCUUGAGUAGCCgGAG- -5'
18242 5' -55.3 NC_004680.1 + 57702 0.68 0.605354
Target:  5'- aUCGuG-UCCCgCGAAagccugaacCUCAUCGGCCa- -3'
miRNA:   3'- -AGCuCaAGGG-GCUU---------GAGUAGCCGGag -5'
18242 5' -55.3 NC_004680.1 + 27193 0.69 0.583629
Target:  5'- aCGAGUU-UCCGAuCUgGUCGGCCa- -3'
miRNA:   3'- aGCUCAAgGGGCUuGAgUAGCCGGag -5'
18242 5' -55.3 NC_004680.1 + 37917 0.69 0.551359
Target:  5'- -gGAGUgcggCCCCacAGCUCcauAUCGGCCUUg -3'
miRNA:   3'- agCUCAa---GGGGc-UUGAG---UAGCCGGAG- -5'
18242 5' -55.3 NC_004680.1 + 48939 0.78 0.180152
Target:  5'- uUUGAaaUCCCCGAACcCAUcCGGCCUCa -3'
miRNA:   3'- -AGCUcaAGGGGCUUGaGUA-GCCGGAG- -5'
18242 5' -55.3 NC_004680.1 + 57034 1.11 0.000869
Target:  5'- uUCGAGUUCCCCGAACUCAUCGGCCUCg -3'
miRNA:   3'- -AGCUCAAGGGGCUUGAGUAGCCGGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.