Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18242 | 5' | -55.3 | NC_004680.1 | + | 33404 | 0.66 | 0.724387 |
Target: 5'- gCGGGaggCCCCGAuCUCGgagugcaGGUCUCg -3' miRNA: 3'- aGCUCaa-GGGGCUuGAGUag-----CCGGAG- -5' |
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18242 | 5' | -55.3 | NC_004680.1 | + | 33562 | 0.67 | 0.681611 |
Target: 5'- aCGGGcgCCCgccgugggGAACUCcUCGGCCUg -3' miRNA: 3'- aGCUCaaGGGg-------CUUGAGuAGCCGGAg -5' |
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18242 | 5' | -55.3 | NC_004680.1 | + | 18952 | 0.67 | 0.649002 |
Target: 5'- ----aUUCCCCGAACUUGUUGGgCUUu -3' miRNA: 3'- agcucAAGGGGCUUGAGUAGCCgGAG- -5' |
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18242 | 5' | -55.3 | NC_004680.1 | + | 57702 | 0.68 | 0.605354 |
Target: 5'- aUCGuG-UCCCgCGAAagccugaacCUCAUCGGCCa- -3' miRNA: 3'- -AGCuCaAGGG-GCUU---------GAGUAGCCGGag -5' |
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18242 | 5' | -55.3 | NC_004680.1 | + | 27193 | 0.69 | 0.583629 |
Target: 5'- aCGAGUU-UCCGAuCUgGUCGGCCa- -3' miRNA: 3'- aGCUCAAgGGGCUuGAgUAGCCGGag -5' |
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18242 | 5' | -55.3 | NC_004680.1 | + | 37917 | 0.69 | 0.551359 |
Target: 5'- -gGAGUgcggCCCCacAGCUCcauAUCGGCCUUg -3' miRNA: 3'- agCUCAa---GGGGc-UUGAG---UAGCCGGAG- -5' |
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18242 | 5' | -55.3 | NC_004680.1 | + | 48939 | 0.78 | 0.180152 |
Target: 5'- uUUGAaaUCCCCGAACcCAUcCGGCCUCa -3' miRNA: 3'- -AGCUcaAGGGGCUUGaGUA-GCCGGAG- -5' |
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18242 | 5' | -55.3 | NC_004680.1 | + | 57034 | 1.11 | 0.000869 |
Target: 5'- uUCGAGUUCCCCGAACUCAUCGGCCUCg -3' miRNA: 3'- -AGCUCAAGGGGCUUGAGUAGCCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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