miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18243 3' -55 NC_004680.1 + 40610 0.65 0.77407
Target:  5'- cCCACGCC-ACGa--CGCGUGCAg-- -3'
miRNA:   3'- cGGUGUGGaUGCaggGCGCACGUaag -5'
18243 3' -55 NC_004680.1 + 31355 0.66 0.763974
Target:  5'- uGUCACGCCUGaugagucaGUCCuCGaCGUGaCGUUUu -3'
miRNA:   3'- -CGGUGUGGAUg-------CAGG-GC-GCAC-GUAAG- -5'
18243 3' -55 NC_004680.1 + 41660 0.66 0.753743
Target:  5'- uCCACACCagcgacugGCGuUCCCGCGcgaucUGCAc-- -3'
miRNA:   3'- cGGUGUGGa-------UGC-AGGGCGC-----ACGUaag -5'
18243 3' -55 NC_004680.1 + 15158 0.66 0.743389
Target:  5'- aCCACACCUACGaguaCCGUGacagcGCAUg- -3'
miRNA:   3'- cGGUGUGGAUGCag--GGCGCa----CGUAag -5'
18243 3' -55 NC_004680.1 + 11353 0.66 0.743389
Target:  5'- -aCACGgCaGCGUCCUGCG-GCAUg- -3'
miRNA:   3'- cgGUGUgGaUGCAGGGCGCaCGUAag -5'
18243 3' -55 NC_004680.1 + 42173 0.67 0.700967
Target:  5'- cGCCcCACCUcuGCGcCCgGCG-GCAcUCa -3'
miRNA:   3'- -CGGuGUGGA--UGCaGGgCGCaCGUaAG- -5'
18243 3' -55 NC_004680.1 + 41166 0.68 0.646521
Target:  5'- cGCCGCGCCUuugccuuguCGUCCaGCG-GCAc-- -3'
miRNA:   3'- -CGGUGUGGAu--------GCAGGgCGCaCGUaag -5'
18243 3' -55 NC_004680.1 + 938 0.68 0.646521
Target:  5'- cGUCACACCgaaccgGCGcCuCCGgGUGCAg-- -3'
miRNA:   3'- -CGGUGUGGa-----UGCaG-GGCgCACGUaag -5'
18243 3' -55 NC_004680.1 + 18281 0.68 0.624578
Target:  5'- gGCCACGCCaaaucuUGaUCCUGCGgggcauacGCAUUCa -3'
miRNA:   3'- -CGGUGUGGau----GC-AGGGCGCa-------CGUAAG- -5'
18243 3' -55 NC_004680.1 + 33500 0.68 0.613611
Target:  5'- uCCACACC-GCGUUCCagGUGUGCGa-- -3'
miRNA:   3'- cGGUGUGGaUGCAGGG--CGCACGUaag -5'
18243 3' -55 NC_004680.1 + 16958 0.68 0.613611
Target:  5'- aUCAuCGCCUuuaGC-UCCCGCGUGCAg-- -3'
miRNA:   3'- cGGU-GUGGA---UGcAGGGCGCACGUaag -5'
18243 3' -55 NC_004680.1 + 2441 0.69 0.559195
Target:  5'- cGCCACGCCgcagACGUguUCCGCGU-CAa-- -3'
miRNA:   3'- -CGGUGUGGa---UGCA--GGGCGCAcGUaag -5'
18243 3' -55 NC_004680.1 + 12342 0.72 0.407644
Target:  5'- uGCCGCGCCggggaGUCCCGCGUcuggugcuggcGCGggUCc -3'
miRNA:   3'- -CGGUGUGGaug--CAGGGCGCA-----------CGUa-AG- -5'
18243 3' -55 NC_004680.1 + 9953 0.75 0.277405
Target:  5'- aGUCACuugaUGCGUCCCGUGUGCGUc- -3'
miRNA:   3'- -CGGUGugg-AUGCAGGGCGCACGUAag -5'
18243 3' -55 NC_004680.1 + 57116 0.93 0.015381
Target:  5'- aGCCACACCUACGUCCCGgcUGCAUUCu -3'
miRNA:   3'- -CGGUGUGGAUGCAGGGCgcACGUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.