miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18243 5' -57.7 NC_004680.1 + 11909 0.66 0.646111
Target:  5'- cGCGAAgucGCGCGGcgacugCCCggggguugcagaCGGCGCCc -3'
miRNA:   3'- -UGCUUac-CGUGCCuaa---GGG------------GCCGCGG- -5'
18243 5' -57.7 NC_004680.1 + 41429 0.66 0.624686
Target:  5'- aGCGuGUGGUGCGGcgaggCCGGgGCCg -3'
miRNA:   3'- -UGCuUACCGUGCCuaaggGGCCgCGG- -5'
18243 5' -57.7 NC_004680.1 + 9227 0.66 0.624686
Target:  5'- gGCGcGGUGGCGCGuGcuGUUCgCgGGgGCCg -3'
miRNA:   3'- -UGC-UUACCGUGC-C--UAAGgGgCCgCGG- -5'
18243 5' -57.7 NC_004680.1 + 16813 0.66 0.613979
Target:  5'- uCGAacGUGGC-CGGAacaCCCGGUucGCCc -3'
miRNA:   3'- uGCU--UACCGuGCCUaagGGGCCG--CGG- -5'
18243 5' -57.7 NC_004680.1 + 14737 0.66 0.603287
Target:  5'- -gGAGUGGCAag----CCCCGGC-CCg -3'
miRNA:   3'- ugCUUACCGUgccuaaGGGGCCGcGG- -5'
18243 5' -57.7 NC_004680.1 + 48911 0.66 0.592618
Target:  5'- -aGAccAUGGuCACGGA-UCgCCuGCGCCa -3'
miRNA:   3'- ugCU--UACC-GUGCCUaAGgGGcCGCGG- -5'
18243 5' -57.7 NC_004680.1 + 51438 0.66 0.592618
Target:  5'- cACcAGUGGCGgGGAgacUUCCUCGGCuGUg -3'
miRNA:   3'- -UGcUUACCGUgCCU---AAGGGGCCG-CGg -5'
18243 5' -57.7 NC_004680.1 + 12437 0.66 0.592618
Target:  5'- cGCGcca-GCACcagacgcgGGAcUCCCCGGCGCg -3'
miRNA:   3'- -UGCuuacCGUG--------CCUaAGGGGCCGCGg -5'
18243 5' -57.7 NC_004680.1 + 30232 0.67 0.581981
Target:  5'- aACGGA-GGCAgCGGAgguaaCCCGGCcuCCa -3'
miRNA:   3'- -UGCUUaCCGU-GCCUaag--GGGCCGc-GG- -5'
18243 5' -57.7 NC_004680.1 + 32463 0.67 0.539901
Target:  5'- cACGaAAUGGCGCGGAccagUgUCCGGCu-- -3'
miRNA:   3'- -UGC-UUACCGUGCCUa---AgGGGCCGcgg -5'
18243 5' -57.7 NC_004680.1 + 24198 0.68 0.519239
Target:  5'- cGCGAccGGCAugUGGAUgggcaccacccUUCCCGGCaCCg -3'
miRNA:   3'- -UGCUuaCCGU--GCCUA-----------AGGGGCCGcGG- -5'
18243 5' -57.7 NC_004680.1 + 494 0.68 0.519239
Target:  5'- gGCGAcgGGCcaGCGGAUUCguCCCGuaaucaGUGUCg -3'
miRNA:   3'- -UGCUuaCCG--UGCCUAAG--GGGC------CGCGG- -5'
18243 5' -57.7 NC_004680.1 + 51743 0.68 0.509026
Target:  5'- cCGAGguauGCGCGGAccUUCCCGGaGCCg -3'
miRNA:   3'- uGCUUac--CGUGCCUa-AGGGGCCgCGG- -5'
18243 5' -57.7 NC_004680.1 + 11195 0.68 0.498898
Target:  5'- gACGAAcGGcCGCGGcGUUCUgCuugGGCGCCg -3'
miRNA:   3'- -UGCUUaCC-GUGCC-UAAGGgG---CCGCGG- -5'
18243 5' -57.7 NC_004680.1 + 24938 0.69 0.433603
Target:  5'- cCGGG-GGCGCccgcagcguuguagUCCCCGGCGCCu -3'
miRNA:   3'- uGCUUaCCGUGccua----------AGGGGCCGCGG- -5'
18243 5' -57.7 NC_004680.1 + 19305 0.69 0.421513
Target:  5'- -----cGGcCACGGugUUCCCGGUGCCg -3'
miRNA:   3'- ugcuuaCC-GUGCCuaAGGGGCCGCGG- -5'
18243 5' -57.7 NC_004680.1 + 11346 0.7 0.412353
Target:  5'- aGCGuccugcGGCAUgccaGGAaUCCCCGGCGgCa -3'
miRNA:   3'- -UGCuua---CCGUG----CCUaAGGGGCCGCgG- -5'
18243 5' -57.7 NC_004680.1 + 38766 0.7 0.403317
Target:  5'- gGCGcg-GGCAUGG-UUCCCCcgccccccGCGCCg -3'
miRNA:   3'- -UGCuuaCCGUGCCuAAGGGGc-------CGCGG- -5'
18243 5' -57.7 NC_004680.1 + 36033 0.7 0.403317
Target:  5'- uCG-AUGGCGgcgagcaguuCGGGUgaugcgCCCCGGCgGCCa -3'
miRNA:   3'- uGCuUACCGU----------GCCUAa-----GGGGCCG-CGG- -5'
18243 5' -57.7 NC_004680.1 + 8780 0.71 0.327095
Target:  5'- aACGAgAUGGUccugccgGCGGAgacccgUCCCGGCGCg -3'
miRNA:   3'- -UGCU-UACCG-------UGCCUaa----GGGGCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.