miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18244 3' -59.2 NC_004680.1 + 28188 0.66 0.546548
Target:  5'- gCCg-GUCGUGGACaccCGGCCcGUGCUg -3'
miRNA:   3'- aGGagCAGCACCUGcu-GCCGG-CGUGA- -5'
18244 3' -59.2 NC_004680.1 + 40578 0.66 0.526078
Target:  5'- cUCUgcgcgCGUCGUGG-CGugGGgcuCUGCGCa -3'
miRNA:   3'- -AGGa----GCAGCACCuGCugCC---GGCGUGa -5'
18244 3' -59.2 NC_004680.1 + 40530 0.66 0.526078
Target:  5'- cUCUgcacgCGUCGUGG-CGugGGgcuCUGCGCa -3'
miRNA:   3'- -AGGa----GCAGCACCuGCugCC---GGCGUGa -5'
18244 3' -59.2 NC_004680.1 + 30955 0.67 0.515951
Target:  5'- --gUCGUCGcggGGAUGAUcGUCGCACUg -3'
miRNA:   3'- aggAGCAGCa--CCUGCUGcCGGCGUGA- -5'
18244 3' -59.2 NC_004680.1 + 30509 0.67 0.502906
Target:  5'- gUCCUCGcCGUcaacgaacagugcgGGAUGguuuuugauguGCGGCCGCAg- -3'
miRNA:   3'- -AGGAGCaGCA--------------CCUGC-----------UGCCGGCGUga -5'
18244 3' -59.2 NC_004680.1 + 2868 0.67 0.47629
Target:  5'- gCCUgCGcCG-GGACGACGaCUGCACa -3'
miRNA:   3'- aGGA-GCaGCaCCUGCUGCcGGCGUGa -5'
18244 3' -59.2 NC_004680.1 + 51456 0.67 0.46661
Target:  5'- uUCCUCGgcuGUGGAUG-CGGCUGgaACUg -3'
miRNA:   3'- -AGGAGCag-CACCUGCuGCCGGCg-UGA- -5'
18244 3' -59.2 NC_004680.1 + 52258 0.68 0.45418
Target:  5'- cUCgCUCGUCGUGGACacggguguggaccuGACucgucuugcugaGGCCGCGu- -3'
miRNA:   3'- -AG-GAGCAGCACCUG--------------CUG------------CCGGCGUga -5'
18244 3' -59.2 NC_004680.1 + 7419 0.68 0.447562
Target:  5'- gUCCUUGUCGaguaugacGACGACGGCCacuuggugcgGCAUg -3'
miRNA:   3'- -AGGAGCAGCac------CUGCUGCCGG----------CGUGa -5'
18244 3' -59.2 NC_004680.1 + 57272 0.68 0.418915
Target:  5'- cUCUCGgaaagcuuucugcUCGUGGGCGuucuCGGCgGCGCc -3'
miRNA:   3'- aGGAGC-------------AGCACCUGCu---GCCGgCGUGa -5'
18244 3' -59.2 NC_004680.1 + 19063 0.69 0.3676
Target:  5'- -gCUUGUCccGGugGGCGGCaCGCAUUa -3'
miRNA:   3'- agGAGCAGcaCCugCUGCCG-GCGUGA- -5'
18244 3' -59.2 NC_004680.1 + 18961 0.69 0.3676
Target:  5'- -aCUUGUUGggcuuuugGGugGcACGGCCGCGCc -3'
miRNA:   3'- agGAGCAGCa-------CCugC-UGCCGGCGUGa -5'
18244 3' -59.2 NC_004680.1 + 32491 0.7 0.327619
Target:  5'- aCCUgCG-CGcccgcaGcGACGACGGCCGCACg -3'
miRNA:   3'- aGGA-GCaGCa-----C-CUGCUGCCGGCGUGa -5'
18244 3' -59.2 NC_004680.1 + 40102 0.7 0.327619
Target:  5'- cUCCUgG-CGUGGGggUGACGGCC-CGCUg -3'
miRNA:   3'- -AGGAgCaGCACCU--GCUGCCGGcGUGA- -5'
18244 3' -59.2 NC_004680.1 + 25626 0.73 0.205453
Target:  5'- gCCUCcUUGUGGGgGugGGCCGCGu- -3'
miRNA:   3'- aGGAGcAGCACCUgCugCCGGCGUga -5'
18244 3' -59.2 NC_004680.1 + 25164 0.73 0.202325
Target:  5'- aCCUUGUCGUGGcgcagcggaaaagguGCgGACGGCUGCAa- -3'
miRNA:   3'- aGGAGCAGCACC---------------UG-CUGCCGGCGUga -5'
18244 3' -59.2 NC_004680.1 + 25914 0.74 0.195186
Target:  5'- gUCUCGcCGUGGugG-CGGCCGC-Cg -3'
miRNA:   3'- aGGAGCaGCACCugCuGCCGGCGuGa -5'
18244 3' -59.2 NC_004680.1 + 57393 1.08 0.000619
Target:  5'- gUCCUCGUCGUGGACGACGGCCGCACUg -3'
miRNA:   3'- -AGGAGCAGCACCUGCUGCCGGCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.