Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18245 | 3' | -60.4 | NC_004680.1 | + | 59373 | 0.67 | 0.349686 |
Target: 5'- -aGGGCACguuuuggGCCGCCAgcuaacuuucGGGCCGCGu-- -3' miRNA: 3'- uaCCCGUG-------CGGUGGU----------UCCGGUGUggu -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 43748 | 0.67 | 0.341542 |
Target: 5'- -aGGGCacaccgcGCGUCAUCAAgggcGGCUGCGCCGg -3' miRNA: 3'- uaCCCG-------UGCGGUGGUU----CCGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 25206 | 0.68 | 0.33433 |
Target: 5'- --uGGCAcCGCCACCAccaccuccguauAGGCCACcguccccgGCCGc -3' miRNA: 3'- uacCCGU-GCGGUGGU------------UCCGGUG--------UGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 19884 | 0.68 | 0.331951 |
Target: 5'- -cGGGCcggaagaacaaccaGCcaCCACCAGGGCCACcauuGCCGc -3' miRNA: 3'- uaCCCG--------------UGc-GGUGGUUCCGGUG----UGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 36590 | 0.68 | 0.329585 |
Target: 5'- -cGGG-ACGCCccgcugguugcgaagGCUGAGGCgCACACCGg -3' miRNA: 3'- uaCCCgUGCGG---------------UGGUUCCG-GUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 6006 | 0.68 | 0.326449 |
Target: 5'- -cGGGCGgGuguucaCCACCGGGGCCAC-UCGg -3' miRNA: 3'- uaCCCGUgC------GGUGGUUCCGGUGuGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 12919 | 0.68 | 0.321787 |
Target: 5'- cUGGGaagcCugGCCAgCCAGGuucggcaacgcgggaGCCGCACCAg -3' miRNA: 3'- uACCC----GugCGGU-GGUUC---------------CGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 25834 | 0.68 | 0.318706 |
Target: 5'- -gGcGGC-CGCCACCAcGGCgAgACCAc -3' miRNA: 3'- uaC-CCGuGCGGUGGUuCCGgUgUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 13429 | 0.68 | 0.303637 |
Target: 5'- gGUGGGCAccggucCGCUgguuCCAAGGC-GCACCGc -3' miRNA: 3'- -UACCCGU------GCGGu---GGUUCCGgUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 12547 | 0.68 | 0.303637 |
Target: 5'- uGUGGcGCACcggcaGCCAUC-GGGCCGcCGCCAc -3' miRNA: 3'- -UACC-CGUG-----CGGUGGuUCCGGU-GUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 39825 | 0.69 | 0.289122 |
Target: 5'- -aGGGaGCGCCGCagaGAGcGCCGCACgGa -3' miRNA: 3'- uaCCCgUGCGGUGg--UUC-CGGUGUGgU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 19592 | 0.69 | 0.282071 |
Target: 5'- -gGcGGCGcCGUCACCcGGGCCaccaACACCAc -3' miRNA: 3'- uaC-CCGU-GCGGUGGuUCCGG----UGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 17172 | 0.69 | 0.282071 |
Target: 5'- -gGGGC-CGCCaAUCGAacGGCUGCGCCGg -3' miRNA: 3'- uaCCCGuGCGG-UGGUU--CCGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 28496 | 0.69 | 0.282071 |
Target: 5'- uUGGGaauaGCCAgCCAGGGCaGCGCCGu -3' miRNA: 3'- uACCCgug-CGGU-GGUUCCGgUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 750 | 0.7 | 0.242612 |
Target: 5'- cGUGcGGCcUGCCccgacagugaGCCAGGGCCgaACACCAu -3' miRNA: 3'- -UAC-CCGuGCGG----------UGGUUCCGG--UGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 42206 | 0.7 | 0.2365 |
Target: 5'- cUGGGC-UGCCACCA---CCGCACCGu -3' miRNA: 3'- uACCCGuGCGGUGGUuccGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 53692 | 0.7 | 0.224664 |
Target: 5'- -gGaGGUACGCCuuuguaGCCGGGuuGCCACACCGa -3' miRNA: 3'- uaC-CCGUGCGG------UGGUUC--CGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 19518 | 0.71 | 0.207857 |
Target: 5'- -cGGGUgacgGCGCCGCCGGuGGUaACACCAc -3' miRNA: 3'- uaCCCG----UGCGGUGGUU-CCGgUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 21945 | 0.72 | 0.18226 |
Target: 5'- gGUGGGCAUGgCGCCGuGGCC-CACa- -3' miRNA: 3'- -UACCCGUGCgGUGGUuCCGGuGUGgu -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 22169 | 0.72 | 0.168274 |
Target: 5'- -cGGGUugucguucACGCCGagccugggguUCGAGGCCGCGCCGa -3' miRNA: 3'- uaCCCG--------UGCGGU----------GGUUCCGGUGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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