miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18245 5' -60.6 NC_004680.1 + 49740 0.67 0.421132
Target:  5'- uCCUGcGCCCGGagacgcucaaCCUCGgCGACCA-GCu -3'
miRNA:   3'- -GGAC-CGGGUC----------GGAGCaGCUGGUgCGu -5'
18245 5' -60.6 NC_004680.1 + 32384 0.67 0.4068
Target:  5'- aCUGGUCCGcGCCauuUCGUgCGGCCgucgucgcugcgggcGCGCAg -3'
miRNA:   3'- gGACCGGGU-CGG---AGCA-GCUGG---------------UGCGU- -5'
18245 5' -60.6 NC_004680.1 + 17597 0.67 0.385885
Target:  5'- cCCUGGUgaGGCgUCGuUCGACCAguUGCGu -3'
miRNA:   3'- -GGACCGggUCGgAGC-AGCUGGU--GCGU- -5'
18245 5' -60.6 NC_004680.1 + 23230 0.68 0.352643
Target:  5'- aUCUGGUcggCCAG-CUCGUCGGgCACGUu -3'
miRNA:   3'- -GGACCG---GGUCgGAGCAGCUgGUGCGu -5'
18245 5' -60.6 NC_004680.1 + 38594 0.68 0.336799
Target:  5'- gCUGGCCCGGUUggagCGgcaGGCCAUGUc -3'
miRNA:   3'- gGACCGGGUCGGa---GCag-CUGGUGCGu -5'
18245 5' -60.6 NC_004680.1 + 12912 0.68 0.336799
Target:  5'- gCCUGG-CCAGCCagGuUCGGCaACGCGg -3'
miRNA:   3'- -GGACCgGGUCGGagC-AGCUGgUGCGU- -5'
18245 5' -60.6 NC_004680.1 + 41343 0.69 0.329073
Target:  5'- --cGGcCCCGGCCUCGcCGcACCacACGCu -3'
miRNA:   3'- ggaCC-GGGUCGGAGCaGC-UGG--UGCGu -5'
18245 5' -60.6 NC_004680.1 + 3152 0.69 0.324501
Target:  5'- uCCcGGCgCGGCCUCaaagaucgaggcguaGUCGAUCGCGUu -3'
miRNA:   3'- -GGaCCGgGUCGGAG---------------CAGCUGGUGCGu -5'
18245 5' -60.6 NC_004680.1 + 44578 0.7 0.285486
Target:  5'- cCCUGGuguccuauCCCGGCCacgucaUCGUC-ACCAUGCGg -3'
miRNA:   3'- -GGACC--------GGGUCGG------AGCAGcUGGUGCGU- -5'
18245 5' -60.6 NC_004680.1 + 17066 0.71 0.246583
Target:  5'- cUCUGGCCCAGg--UGUCGAUCccgGCGCAg -3'
miRNA:   3'- -GGACCGGGUCggaGCAGCUGG---UGCGU- -5'
18245 5' -60.6 NC_004680.1 + 12627 0.71 0.240543
Target:  5'- gCUGGacgcgauggcaCCCGGCgCUgGUCaGGCCGCGCAg -3'
miRNA:   3'- gGACC-----------GGGUCG-GAgCAG-CUGGUGCGU- -5'
18245 5' -60.6 NC_004680.1 + 42641 0.71 0.228834
Target:  5'- uCCUGGCCCAgGCggcccgccugCUCGaCGACgGCGCc -3'
miRNA:   3'- -GGACCGGGU-CG----------GAGCaGCUGgUGCGu -5'
18245 5' -60.6 NC_004680.1 + 21342 0.84 0.028308
Target:  5'- aCCgcgcgGGCUCAGCCcCGUCGGCCACGUAu -3'
miRNA:   3'- -GGa----CCGGGUCGGaGCAGCUGGUGCGU- -5'
18245 5' -60.6 NC_004680.1 + 58474 1.1 0.000304
Target:  5'- aCCUGGCCCAGCCUCGUCGACCACGCAg -3'
miRNA:   3'- -GGACCGGGUCGGAGCAGCUGGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.