miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 3' -56.8 NC_004680.1 + 59367 0.66 0.628649
Target:  5'- -cCCCAGCAaccccccCCGGgGGGgUCUGCGCg -3'
miRNA:   3'- uuGGGUUGU-------GGCCgCUUgAGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 5685 0.66 0.623217
Target:  5'- cGCCCGcagaccagcagcguCGCCGGaaGugUCCGCGCUg -3'
miRNA:   3'- uUGGGUu-------------GUGGCCgcUugAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 11820 0.66 0.618873
Target:  5'- cAACCCccgggcaguCGCCGcGCG-ACUUCGCGCa -3'
miRNA:   3'- -UUGGGuu-------GUGGC-CGCuUGAGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 31555 0.66 0.618873
Target:  5'- aAAUCC-GCACUGGUGucg-CCACGCUg -3'
miRNA:   3'- -UUGGGuUGUGGCCGCuugaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 11296 0.66 0.618873
Target:  5'- ---gCAACACCGGUGcauccggcAACUUCGgGCCa -3'
miRNA:   3'- uuggGUUGUGGCCGC--------UUGAGGUgCGG- -5'
18246 3' -56.8 NC_004680.1 + 11037 0.66 0.618873
Target:  5'- -cCCCGGCcCCGuCGAuguCUCC-CGCCg -3'
miRNA:   3'- uuGGGUUGuGGCcGCUu--GAGGuGCGG- -5'
18246 3' -56.8 NC_004680.1 + 42402 0.66 0.618873
Target:  5'- cACCUcguucugcgaAGCACCaucGGCcAGCaUCCGCGCCg -3'
miRNA:   3'- uUGGG----------UUGUGG---CCGcUUG-AGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 42813 0.66 0.618873
Target:  5'- -uCCCAGCcacgACCGGgGAACUugCgGCGCa -3'
miRNA:   3'- uuGGGUUG----UGGCCgCUUGA--GgUGCGg -5'
18246 3' -56.8 NC_004680.1 + 36732 0.66 0.618873
Target:  5'- gGACCU--CGCgGGCGAACUCCugACGgUg -3'
miRNA:   3'- -UUGGGuuGUGgCCGCUUGAGG--UGCgG- -5'
18246 3' -56.8 NC_004680.1 + 27260 0.67 0.608022
Target:  5'- cACCCAggaaggcgGCGgCGGCGAcGCUgC-CGCCg -3'
miRNA:   3'- uUGGGU--------UGUgGCCGCU-UGAgGuGCGG- -5'
18246 3' -56.8 NC_004680.1 + 33335 0.67 0.608022
Target:  5'- gGGCCUcccGCACCGcCGAGCuggUCCAUGUCa -3'
miRNA:   3'- -UUGGGu--UGUGGCcGCUUG---AGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 11101 0.67 0.608022
Target:  5'- -cCCCGGCGCCcaaGCaGAACgCCGCgGCCg -3'
miRNA:   3'- uuGGGUUGUGGc--CG-CUUGaGGUG-CGG- -5'
18246 3' -56.8 NC_004680.1 + 40997 0.67 0.608022
Target:  5'- gGGCCUcgggggucgAGC-CUGGUGAguAgUCCACGCCg -3'
miRNA:   3'- -UUGGG---------UUGuGGCCGCU--UgAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 51911 0.67 0.60152
Target:  5'- cAGCgCAGCACCGagagcauuggcuauuGCGAACaCCGCgGCCc -3'
miRNA:   3'- -UUGgGUUGUGGC---------------CGCUUGaGGUG-CGG- -5'
18246 3' -56.8 NC_004680.1 + 22234 0.67 0.597191
Target:  5'- cAACCCGAaACCGGgaGACUgCGCGCg -3'
miRNA:   3'- -UUGGGUUgUGGCCgcUUGAgGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 27038 0.67 0.597191
Target:  5'- -cCCCAGguugGCCGGCGAG-UUCGCGCa -3'
miRNA:   3'- uuGGGUUg---UGGCCGCUUgAGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 53430 0.67 0.597191
Target:  5'- uACCCAcacuccACAaCGGCaacauGCUCUACGCCc -3'
miRNA:   3'- uUGGGU------UGUgGCCGcu---UGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 7241 0.67 0.593947
Target:  5'- cACCCGACAagCGGCGggUagaaaccuuUCCcagaggggacagccACGCCa -3'
miRNA:   3'- uUGGGUUGUg-GCCGCuuG---------AGG--------------UGCGG- -5'
18246 3' -56.8 NC_004680.1 + 53609 0.67 0.586389
Target:  5'- cAACCCGGCuACaaaGGCGuacCUCCAaccauCGCCc -3'
miRNA:   3'- -UUGGGUUG-UGg--CCGCuu-GAGGU-----GCGG- -5'
18246 3' -56.8 NC_004680.1 + 54447 0.67 0.586389
Target:  5'- gAACCUGAagcCACCGaCGAGCaCCACGCa -3'
miRNA:   3'- -UUGGGUU---GUGGCcGCUUGaGGUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.