miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 5' -60.2 NC_004680.1 + 59131 1.08 0.000459
Target:  5'- uACAACCCCGAUCACGCGGCGGCGCAGa -3'
miRNA:   3'- -UGUUGGGGCUAGUGCGCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 18437 0.67 0.403967
Target:  5'- -gGugUCCGcuAUC-CGCGGCGGCGUg- -3'
miRNA:   3'- ugUugGGGC--UAGuGCGCCGCCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 12201 0.67 0.412912
Target:  5'- aGCcGCCCCG-UC-CGCGGCaGCGUu- -3'
miRNA:   3'- -UGuUGGGGCuAGuGCGCCGcCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 14605 0.67 0.431163
Target:  5'- gGCGAuCCCCGcgaaGUCGCcUGGCgaaccGGCGCAGc -3'
miRNA:   3'- -UGUU-GGGGC----UAGUGcGCCG-----CCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 36402 0.67 0.440464
Target:  5'- cCAAgCCUGAgguUGCcGCGGCGCAGa -3'
miRNA:   3'- uGUUgGGGCUaguGCGcCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 21300 0.66 0.447042
Target:  5'- -aGGCCuCCGAgggggccacgguguUCGCgGUGGUGGCGUGGg -3'
miRNA:   3'- ugUUGG-GGCU--------------AGUG-CGCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 40647 0.66 0.478763
Target:  5'- -gGACUCUGcgCACGUcGUGGCGUGGg -3'
miRNA:   3'- ugUUGGGGCuaGUGCGcCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 29002 0.66 0.498517
Target:  5'- -aAACCgCGAUCGCcacacuCGGCgcgGGCGCGGu -3'
miRNA:   3'- ugUUGGgGCUAGUGc-----GCCG---CCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 29414 0.66 0.498517
Target:  5'- gACGACCUCGAcgagaUACGCGaucUGGUGCGGg -3'
miRNA:   3'- -UGUUGGGGCUa----GUGCGCc--GCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 25230 0.67 0.395146
Target:  5'- aGCggUUCgGGUCAC-CaGCGGCGCGGa -3'
miRNA:   3'- -UGuuGGGgCUAGUGcGcCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 3549 0.68 0.38645
Target:  5'- gAUAACCCUGuUCGC-CGGCaauccGGUGCAGc -3'
miRNA:   3'- -UGUUGGGGCuAGUGcGCCG-----CCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 7882 0.68 0.38645
Target:  5'- uGCAACCCUGAgga--UGGUGGUGCGGa -3'
miRNA:   3'- -UGUUGGGGCUagugcGCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 21353 0.74 0.159027
Target:  5'- uCAGCCCCGucggcCACGUauGGCGGCGCc- -3'
miRNA:   3'- uGUUGGGGCua---GUGCG--CCGCCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 9214 0.73 0.176626
Target:  5'- --cGCgCCGGUCaaugGCGCGGUGGCGCGu -3'
miRNA:   3'- uguUGgGGCUAG----UGCGCCGCCGCGUc -5'
18246 5' -60.2 NC_004680.1 + 17757 0.72 0.217065
Target:  5'- aACAGCccaagcuucaaCCCGAUuCAgGCuGCGGCGCAGu -3'
miRNA:   3'- -UGUUG-----------GGGCUA-GUgCGcCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 19340 0.69 0.299419
Target:  5'- uACAucgaCCCGGUUGCGguCGGUGGCGguGg -3'
miRNA:   3'- -UGUug--GGGCUAGUGC--GCCGCCGCguC- -5'
18246 5' -60.2 NC_004680.1 + 28637 0.69 0.306666
Target:  5'- -aAACCCCGc---CGUGGUGGCGCGa -3'
miRNA:   3'- ugUUGGGGCuaguGCGCCGCCGCGUc -5'
18246 5' -60.2 NC_004680.1 + 25533 0.68 0.356208
Target:  5'- cCGACCCCGc-CACGCGGCccacccccacaaggaGGCGUu- -3'
miRNA:   3'- uGUUGGGGCuaGUGCGCCG---------------CCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 59371 0.68 0.360307
Target:  5'- aGCAACCCCccccgggggGGUCuGCGCGGCcccggaaGGCGC-- -3'
miRNA:   3'- -UGUUGGGG---------CUAG-UGCGCCG-------CCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 28088 0.68 0.377881
Target:  5'- uGCAGgCCCGAUacaACGCGGCaggacuguuGCGCGa -3'
miRNA:   3'- -UGUUgGGGCUAg--UGCGCCGc--------CGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.