miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 5' -60.2 NC_004680.1 + 6010 0.68 0.38645
Target:  5'- gACuGCUCCGGUgugaGCGCuGCGGCGCu- -3'
miRNA:   3'- -UGuUGGGGCUAg---UGCGcCGCCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 3549 0.68 0.38645
Target:  5'- gAUAACCCUGuUCGC-CGGCaauccGGUGCAGc -3'
miRNA:   3'- -UGUUGGGGCuAGUGcGCCG-----CCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 7882 0.68 0.38645
Target:  5'- uGCAACCCUGAgga--UGGUGGUGCGGa -3'
miRNA:   3'- -UGUUGGGGCUagugcGCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 28088 0.68 0.377881
Target:  5'- uGCAGgCCCGAUacaACGCGGCaggacuguuGCGCGa -3'
miRNA:   3'- -UGUUgGGGCUAg--UGCGCCGc--------CGCGUc -5'
18246 5' -60.2 NC_004680.1 + 59371 0.68 0.360307
Target:  5'- aGCAACCCCccccgggggGGUCuGCGCGGCcccggaaGGCGC-- -3'
miRNA:   3'- -UGUUGGGG---------CUAG-UGCGCCG-------CCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 9976 0.68 0.359484
Target:  5'- aGCAACgCCGAUgAugccuguCGCGGCGGCcgugaaaGCGGu -3'
miRNA:   3'- -UGUUGgGGCUAgU-------GCGCCGCCG-------CGUC- -5'
18246 5' -60.2 NC_004680.1 + 25533 0.68 0.356208
Target:  5'- cCGACCCCGc-CACGCGGCccacccccacaaggaGGCGUu- -3'
miRNA:   3'- uGUUGGGGCuaGUGCGCCG---------------CCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 12738 0.68 0.344107
Target:  5'- aGCuucACCCCGGUCuGCGCGGCcugaccagcgccgGGUGCc- -3'
miRNA:   3'- -UGu--UGGGGCUAG-UGCGCCG-------------CCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 34645 0.69 0.314046
Target:  5'- gACGGCaCCCacaaCAUG-GGCGGCGCAGa -3'
miRNA:   3'- -UGUUG-GGGcua-GUGCgCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 28637 0.69 0.306666
Target:  5'- -aAACCCCGc---CGUGGUGGCGCGa -3'
miRNA:   3'- ugUUGGGGCuaguGCGCCGCCGCGUc -5'
18246 5' -60.2 NC_004680.1 + 19340 0.69 0.299419
Target:  5'- uACAucgaCCCGGUUGCGguCGGUGGCGguGg -3'
miRNA:   3'- -UGUug--GGGCUAGUGC--GCCGCCGCguC- -5'
18246 5' -60.2 NC_004680.1 + 23165 0.7 0.271757
Target:  5'- --cGCCCCGGUCGUGCcaGCGGCGcCAGu -3'
miRNA:   3'- uguUGGGGCUAGUGCGc-CGCCGC-GUC- -5'
18246 5' -60.2 NC_004680.1 + 42274 0.71 0.252387
Target:  5'- gGCAGCCCagcuguucggCGAUCuGCGUGGCGGUccaacccauGCGGg -3'
miRNA:   3'- -UGUUGGG----------GCUAG-UGCGCCGCCG---------CGUC- -5'
18246 5' -60.2 NC_004680.1 + 11261 0.71 0.230658
Target:  5'- gAUGACCCCGA-CGCGCcaggaGGCGGCagaaucgggucacccGCAGg -3'
miRNA:   3'- -UGUUGGGGCUaGUGCG-----CCGCCG---------------CGUC- -5'
18246 5' -60.2 NC_004680.1 + 26463 0.71 0.228344
Target:  5'- -aAACCCCGcgCAccuCGUGGUGGCGgGGu -3'
miRNA:   3'- ugUUGGGGCuaGU---GCGCCGCCGCgUC- -5'
18246 5' -60.2 NC_004680.1 + 17757 0.72 0.217065
Target:  5'- aACAGCccaagcuucaaCCCGAUuCAgGCuGCGGCGCAGu -3'
miRNA:   3'- -UGUUG-----------GGGCUA-GUgCGcCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 9214 0.73 0.176626
Target:  5'- --cGCgCCGGUCaaugGCGCGGUGGCGCGu -3'
miRNA:   3'- uguUGgGGCUAG----UGCGCCGCCGCGUc -5'
18246 5' -60.2 NC_004680.1 + 21353 0.74 0.159027
Target:  5'- uCAGCCCCGucggcCACGUauGGCGGCGCc- -3'
miRNA:   3'- uGUUGGGGCua---GUGCG--CCGCCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 8951 0.74 0.139263
Target:  5'- cACGACCUgaaCGAuccgcaccUCACGCGGCGGCGaCAc -3'
miRNA:   3'- -UGUUGGG---GCU--------AGUGCGCCGCCGC-GUc -5'
18246 5' -60.2 NC_004680.1 + 43619 0.77 0.097988
Target:  5'- gGCcGCCCUGGUCgaACGUGGCGGCGUc- -3'
miRNA:   3'- -UGuUGGGGCUAG--UGCGCCGCCGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.