Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1825 | 5' | -57.7 | NC_001347.2 | + | 164333 | 0.66 | 0.905025 |
Target: 5'- -uCAGCGUccGGCcucggguuGCCUGGacgccuGGGCGCGAc -3' miRNA: 3'- uuGUUGCA--UCG--------CGGACCg-----CUCGCGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 217135 | 0.66 | 0.879053 |
Target: 5'- uGCGGCGUuacAGCGUCUGGUGcGGCaUGAg -3' miRNA: 3'- uUGUUGCA---UCGCGGACCGC-UCGcGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 58155 | 0.66 | 0.879053 |
Target: 5'- cGACGAgGUGGCGCauCUGuG-GGGCGUGAc -3' miRNA: 3'- -UUGUUgCAUCGCG--GAC-CgCUCGCGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 190608 | 0.66 | 0.885197 |
Target: 5'- cAGCGACGUgcacGGCGCgugCUGGCGccgccuuGGCGCc- -3' miRNA: 3'- -UUGUUGCA----UCGCG---GACCGC-------UCGCGcu -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 52196 | 0.66 | 0.904418 |
Target: 5'- gGGCAAgGUGGCGCUUcgcuacgcGGUGAggaaacugaugaaGCGCGGa -3' miRNA: 3'- -UUGUUgCAUCGCGGA--------CCGCU-------------CGCGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 56765 | 0.66 | 0.898858 |
Target: 5'- gAACAGCGgcaAGuCGCgUGGCG-GCgGCGGu -3' miRNA: 3'- -UUGUUGCa--UC-GCGgACCGCuCG-CGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 165140 | 0.66 | 0.898858 |
Target: 5'- cACAGCGccGCGCUggaugacGGUGAuGCGCGGc -3' miRNA: 3'- uUGUUGCauCGCGGa------CCGCU-CGCGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 87784 | 0.66 | 0.892471 |
Target: 5'- uGCuuCGgcGUGCCcGGCGAGaCGgGAg -3' miRNA: 3'- uUGuuGCauCGCGGaCCGCUC-GCgCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 191552 | 0.66 | 0.908619 |
Target: 5'- cAGCAACGUcugucggAGCGCC-GGCuGAggcagcagcgucgcGCGCGGg -3' miRNA: 3'- -UUGUUGCA-------UCGCGGaCCG-CU--------------CGCGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 152309 | 0.67 | 0.841158 |
Target: 5'- cGCuuguACGUGGCgGCCgaaccgcUGGCuuauGAGCGCGAc -3' miRNA: 3'- uUGu---UGCAUCG-CGG-------ACCG----CUCGCGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 227932 | 0.67 | 0.841948 |
Target: 5'- --gGGCGUgcugGGCGCgCUGGCGcugGGaCGCGAg -3' miRNA: 3'- uugUUGCA----UCGCG-GACCGC---UC-GCGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 228301 | 0.67 | 0.841948 |
Target: 5'- gGACGACGUccCGCCagcGGCGAGCgGCa- -3' miRNA: 3'- -UUGUUGCAucGCGGa--CCGCUCG-CGcu -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 77063 | 0.67 | 0.864801 |
Target: 5'- uGCAGCGUgaGGCGCg-GGCGcGCGuCGGc -3' miRNA: 3'- uUGUUGCA--UCGCGgaCCGCuCGC-GCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 199396 | 0.67 | 0.872029 |
Target: 5'- uACu-CGUGGcCGCCUGGCuuGUGCGu -3' miRNA: 3'- uUGuuGCAUC-GCGGACCGcuCGCGCu -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 185841 | 0.68 | 0.808983 |
Target: 5'- uAUAugGUAGC-UCUGcCGAGCGCGGg -3' miRNA: 3'- uUGUugCAUCGcGGACcGCUCGCGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 130312 | 0.68 | 0.808983 |
Target: 5'- gGGCaAGCGaAGCGCCaucaugacGCGGGCGCGGu -3' miRNA: 3'- -UUG-UUGCaUCGCGGac------CGCUCGCGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 32740 | 0.68 | 0.791559 |
Target: 5'- cGCAGCGUGGCcgGCgUGGCG-GC-CGAc -3' miRNA: 3'- uUGUUGCAUCG--CGgACCGCuCGcGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 30996 | 0.68 | 0.791559 |
Target: 5'- aGACGGgGUcGacgaGgCUGGUGAGCGCGAa -3' miRNA: 3'- -UUGUUgCAuCg---CgGACCGCUCGCGCU- -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 63969 | 0.68 | 0.791559 |
Target: 5'- --gAACGUuGCGCCUGcuCGAGCGCc- -3' miRNA: 3'- uugUUGCAuCGCGGACc-GCUCGCGcu -5' |
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1825 | 5' | -57.7 | NC_001347.2 | + | 134875 | 0.69 | 0.77359 |
Target: 5'- cAGCAACGaguucaUGGCGgCugUGGCGGGuCGCGAc -3' miRNA: 3'- -UUGUUGC------AUCGCgG--ACCGCUC-GCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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