miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1825 5' -57.7 NC_001347.2 + 28795 0.69 0.745759
Target:  5'- -cCGGCGUcgcuGGCGCUUGGUGcGCGaCGAa -3'
miRNA:   3'- uuGUUGCA----UCGCGGACCGCuCGC-GCU- -5'
1825 5' -57.7 NC_001347.2 + 113004 0.69 0.736282
Target:  5'- gGGCAuguaGUAGCGUagaucgGGCGAGuCGCGAu -3'
miRNA:   3'- -UUGUug--CAUCGCGga----CCGCUC-GCGCU- -5'
1825 5' -57.7 NC_001347.2 + 31339 0.7 0.717079
Target:  5'- uAAUcGCGUAGCGUCUGGUaaaccucgguGAGcCGCGGc -3'
miRNA:   3'- -UUGuUGCAUCGCGGACCG----------CUC-GCGCU- -5'
1825 5' -57.7 NC_001347.2 + 79369 0.71 0.648137
Target:  5'- cGCAGCGgcGUGCCgUGcGCGAaugcauGCGCGAg -3'
miRNA:   3'- uUGUUGCauCGCGG-AC-CGCU------CGCGCU- -5'
1825 5' -57.7 NC_001347.2 + 58730 0.71 0.638177
Target:  5'- uAUGGCGUcGUGCCacuuUGGCGAGUGUGAc -3'
miRNA:   3'- uUGUUGCAuCGCGG----ACCGCUCGCGCU- -5'
1825 5' -57.7 NC_001347.2 + 55462 0.72 0.588453
Target:  5'- uGGCcuUGUGGCGCCUGuGCaugaAGCGCGAg -3'
miRNA:   3'- -UUGuuGCAUCGCGGAC-CGc---UCGCGCU- -5'
1825 5' -57.7 NC_001347.2 + 229586 0.72 0.568727
Target:  5'- aGACuGCGUGGCGCCaaGGCG-GCGCc- -3'
miRNA:   3'- -UUGuUGCAUCGCGGa-CCGCuCGCGcu -5'
1825 5' -57.7 NC_001347.2 + 144789 0.72 0.558924
Target:  5'- cGCAGCGguucgGGCgGCUUGaGCGGGCGCGc -3'
miRNA:   3'- uUGUUGCa----UCG-CGGAC-CGCUCGCGCu -5'
1825 5' -57.7 NC_001347.2 + 213764 0.73 0.539468
Target:  5'- -uCGAgGUAGCGCCagccgcccgcuUGGcCGAGUGCGAa -3'
miRNA:   3'- uuGUUgCAUCGCGG-----------ACC-GCUCGCGCU- -5'
1825 5' -57.7 NC_001347.2 + 228197 0.73 0.520247
Target:  5'- cGCAGcCGUacGGCGCCgccGGCGggGGCGCGAu -3'
miRNA:   3'- uUGUU-GCA--UCGCGGa--CCGC--UCGCGCU- -5'
1825 5' -57.7 NC_001347.2 + 120816 0.75 0.446441
Target:  5'- -cCGGCGgcGGCGCCaUGGCGGGCGCc- -3'
miRNA:   3'- uuGUUGCa-UCGCGG-ACCGCUCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.