miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18250 3' -54.3 NC_004681.1 + 26962 0.66 0.84087
Target:  5'- cGCCAuagGUGGCgGUGgggacc-GGCCCAc -3'
miRNA:   3'- -CGGU---UACCGgCACauaagcaCCGGGU- -5'
18250 3' -54.3 NC_004681.1 + 52298 0.66 0.815855
Target:  5'- gGCCGuucuUGGCCGUGgauUUCGUGuuuuCUCGg -3'
miRNA:   3'- -CGGUu---ACCGGCACau-AAGCACc---GGGU- -5'
18250 3' -54.3 NC_004681.1 + 30587 0.67 0.781556
Target:  5'- cGCCAA-GGCgGUucgcugccugacggcGUG--CGUGGCCCAu -3'
miRNA:   3'- -CGGUUaCCGgCA---------------CAUaaGCACCGGGU- -5'
18250 3' -54.3 NC_004681.1 + 28755 0.68 0.716069
Target:  5'- -aCGGUGucGCCaUGgaGUUCGUGGCCCAg -3'
miRNA:   3'- cgGUUAC--CGGcACa-UAAGCACCGGGU- -5'
18250 3' -54.3 NC_004681.1 + 33469 0.8 0.172927
Target:  5'- gGCCAGUGGCCGUGgcugAUccUgGUGGCCg- -3'
miRNA:   3'- -CGGUUACCGGCACa---UA--AgCACCGGgu -5'
18250 3' -54.3 NC_004681.1 + 1517 1.11 0.001323
Target:  5'- cGCCAAUGGCCGUGUAUUCGUGGCCCAu -3'
miRNA:   3'- -CGGUUACCGGCACAUAAGCACCGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.