Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18251 | 3' | -62.8 | NC_004681.1 | + | 45448 | 0.67 | 0.377424 |
Target: 5'- uCGGUGUGGUgaugaacgacagCGuCCaCUCCGagcUGGCCACCc -3' miRNA: 3'- -GCCACGCCG------------GC-GG-GAGGU---GCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 7263 | 0.67 | 0.369352 |
Target: 5'- ---cGCGGCCGUccaCCUCgGCGccgagugcGCCGCCu -3' miRNA: 3'- gccaCGCCGGCG---GGAGgUGC--------UGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 16241 | 0.67 | 0.41952 |
Target: 5'- aCGG-GaUGGCCGCCagcgCCGCGAa-GCCg -3' miRNA: 3'- -GCCaC-GCCGGCGGga--GGUGCUggUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 39349 | 0.68 | 0.353568 |
Target: 5'- ---cGCGGCgGCCCUUgGCGcCCuuGCCg -3' miRNA: 3'- gccaCGCCGgCGGGAGgUGCuGG--UGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 511 | 0.68 | 0.32345 |
Target: 5'- uGGaccCGGCCaUCUUCCGCGGCCGCg -3' miRNA: 3'- gCCac-GCCGGcGGGAGGUGCUGGUGg -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 48859 | 0.68 | 0.330797 |
Target: 5'- aGGUGUaGCCGCCgUCCugGagguGCUggACCa -3' miRNA: 3'- gCCACGcCGGCGGgAGGugC----UGG--UGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 41126 | 0.68 | 0.353568 |
Target: 5'- uGG-GUGGCUaCCCUgCCGCGAuggauggcaagcCCACCa -3' miRNA: 3'- gCCaCGCCGGcGGGA-GGUGCU------------GGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 39255 | 0.68 | 0.338265 |
Target: 5'- gGGcGCcaagGGCCGCCgcgucaaguaCUCCccgaugugcGCGGCCACCa -3' miRNA: 3'- gCCaCG----CCGGCGG----------GAGG---------UGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 50381 | 0.68 | 0.32345 |
Target: 5'- aGG-GCGGCUaCCgCUaCCACGACUACg -3' miRNA: 3'- gCCaCGCCGGcGG-GA-GGUGCUGGUGg -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 10298 | 0.68 | 0.3614 |
Target: 5'- aGGUGUGGCCgGUgCUCCACucggaGCCg -3' miRNA: 3'- gCCACGCCGG-CGgGAGGUGcugg-UGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 7301 | 0.68 | 0.330797 |
Target: 5'- cCGGcacCGGCCGCCUUCU-CGAgUACCu -3' miRNA: 3'- -GCCac-GCCGGCGGGAGGuGCUgGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 62982 | 0.68 | 0.338265 |
Target: 5'- uGGUGCGGa-GCuCUUCCA-GGCCGCUu -3' miRNA: 3'- gCCACGCCggCG-GGAGGUgCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 46173 | 0.69 | 0.281937 |
Target: 5'- gCGGcuucGCGGCCGaCUUCCAUGuCCAgCCa -3' miRNA: 3'- -GCCa---CGCCGGCgGGAGGUGCuGGU-GG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 33860 | 0.69 | 0.302145 |
Target: 5'- uGGUGCGGaaGCUCccagCCGCGcucgGCCGCUu -3' miRNA: 3'- gCCACGCCggCGGGa---GGUGC----UGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 61409 | 0.69 | 0.309124 |
Target: 5'- aCGGUGCGcuuGUCGCCCUCCuuggucucgaAgGAgCGCUg -3' miRNA: 3'- -GCCACGC---CGGCGGGAGG----------UgCUgGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 60687 | 0.69 | 0.316226 |
Target: 5'- uGGUGCGGUCuacgGCCgUCUcgaugaggauGCGACC-CCg -3' miRNA: 3'- gCCACGCCGG----CGGgAGG----------UGCUGGuGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 38934 | 0.69 | 0.309124 |
Target: 5'- -----aGGuaGCCCUCCACGcuGCCGCCg -3' miRNA: 3'- gccacgCCggCGGGAGGUGC--UGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 12780 | 0.69 | 0.281937 |
Target: 5'- uCGGUG-GGUCGCUCcguUCuCACGGCgACCg -3' miRNA: 3'- -GCCACgCCGGCGGG---AG-GUGCUGgUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 34710 | 0.69 | 0.288552 |
Target: 5'- uCGGUGCGGgcuugggaauucCCGCgCgCUuCGGCCGCCg -3' miRNA: 3'- -GCCACGCC------------GGCGgGaGGuGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 40630 | 0.69 | 0.288552 |
Target: 5'- ---gGUGGCCGCCCUCUcccaGCuacuCCGCCa -3' miRNA: 3'- gccaCGCCGGCGGGAGG----UGcu--GGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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