miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 511 0.68 0.32345
Target:  5'- uGGaccCGGCCaUCUUCCGCGGCCGCg -3'
miRNA:   3'- gCCac-GCCGGcGGGAGGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 39349 0.68 0.353568
Target:  5'- ---cGCGGCgGCCCUUgGCGcCCuuGCCg -3'
miRNA:   3'- gccaCGCCGgCGGGAGgUGCuGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 10298 0.68 0.3614
Target:  5'- aGGUGUGGCCgGUgCUCCACucggaGCCg -3'
miRNA:   3'- gCCACGCCGG-CGgGAGGUGcugg-UGG- -5'
18251 3' -62.8 NC_004681.1 + 41126 0.68 0.353568
Target:  5'- uGG-GUGGCUaCCCUgCCGCGAuggauggcaagcCCACCa -3'
miRNA:   3'- gCCaCGCCGGcGGGA-GGUGCU------------GGUGG- -5'
18251 3' -62.8 NC_004681.1 + 62982 0.68 0.338265
Target:  5'- uGGUGCGGa-GCuCUUCCA-GGCCGCUu -3'
miRNA:   3'- gCCACGCCggCG-GGAGGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7301 0.68 0.330797
Target:  5'- cCGGcacCGGCCGCCUUCU-CGAgUACCu -3'
miRNA:   3'- -GCCac-GCCGGCGGGAGGuGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 48859 0.68 0.330797
Target:  5'- aGGUGUaGCCGCCgUCCugGagguGCUggACCa -3'
miRNA:   3'- gCCACGcCGGCGGgAGGugC----UGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 39255 0.68 0.338265
Target:  5'- gGGcGCcaagGGCCGCCgcgucaaguaCUCCccgaugugcGCGGCCACCa -3'
miRNA:   3'- gCCaCG----CCGGCGG----------GAGG---------UGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 14543 0.67 0.410874
Target:  5'- aCGGggucgGCaucGCCGCCaccgccaCCACGGCCGCa -3'
miRNA:   3'- -GCCa----CGc--CGGCGGga-----GGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 10730 0.67 0.369352
Target:  5'- uGGUGCuGGgCGUCC---GCGACCACUg -3'
miRNA:   3'- gCCACG-CCgGCGGGaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 29465 0.67 0.369352
Target:  5'- gCGGUGaguCGGUCaCCCUgucccucaCCGgGACCACCu -3'
miRNA:   3'- -GCCAC---GCCGGcGGGA--------GGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 45364 0.67 0.369352
Target:  5'- aCGG-GCgGGgCGUCCggugcugCCACGAgCACCu -3'
miRNA:   3'- -GCCaCG-CCgGCGGGa------GGUGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 538 0.67 0.369352
Target:  5'- aGGUuggacgcccaGCGGagGCCCUCguCGuCCACCg -3'
miRNA:   3'- gCCA----------CGCCggCGGGAGguGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 41559 0.67 0.41952
Target:  5'- ---cGCGGCCGCCaugCaGCG-CCACCc -3'
miRNA:   3'- gccaCGCCGGCGGga-GgUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 19785 0.67 0.393919
Target:  5'- gGuGUGCGGCucCGCUaagaACGGCCGCCa -3'
miRNA:   3'- gC-CACGCCG--GCGGgaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 74742 0.67 0.377424
Target:  5'- cCGGccGCGGgUGUCCUCCGCc-UCACCa -3'
miRNA:   3'- -GCCa-CGCCgGCGGGAGGUGcuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 24839 0.67 0.377424
Target:  5'- uCGGcGuCGGCgGCgCgggCgGCGGCCGCCa -3'
miRNA:   3'- -GCCaC-GCCGgCGgGa--GgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 45448 0.67 0.377424
Target:  5'- uCGGUGUGGUgaugaacgacagCGuCCaCUCCGagcUGGCCACCc -3'
miRNA:   3'- -GCCACGCCG------------GC-GG-GAGGU---GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7263 0.67 0.369352
Target:  5'- ---cGCGGCCGUccaCCUCgGCGccgagugcGCCGCCu -3'
miRNA:   3'- gccaCGCCGGCG---GGAGgUGC--------UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 11970 0.67 0.376611
Target:  5'- uCGGUGaCGucgguacGCUGCgCgcgCCGCGACUGCCa -3'
miRNA:   3'- -GCCAC-GC-------CGGCGgGa--GGUGCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.