miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 38934 0.69 0.309124
Target:  5'- -----aGGuaGCCCUCCACGcuGCCGCCg -3'
miRNA:   3'- gccacgCCggCGGGAGGUGC--UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 38331 0.66 0.446103
Target:  5'- aCGGUGCcuauggcGCCGCCgCgggacgUCUuCGGCCGCCc -3'
miRNA:   3'- -GCCACGc------CGGCGG-G------AGGuGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 38214 0.66 0.464338
Target:  5'- uGGgGCGGCCGaagaCgUcCCGCGGCggCGCCa -3'
miRNA:   3'- gCCaCGCCGGCg---GgA-GGUGCUG--GUGG- -5'
18251 3' -62.8 NC_004681.1 + 37675 0.66 0.473601
Target:  5'- ---aGCGGCCGCgcgucgcuUCUCCAauuCCGCCa -3'
miRNA:   3'- gccaCGCCGGCG--------GGAGGUgcuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 35477 0.77 0.086702
Target:  5'- gCGGUGUGuacgccGUCGCCUUCCucCGACCACCc -3'
miRNA:   3'- -GCCACGC------CGGCGGGAGGu-GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 35148 0.66 0.446103
Target:  5'- --cUGUGGuuGCCgUCCGCGGCgAgCa -3'
miRNA:   3'- gccACGCCggCGGgAGGUGCUGgUgG- -5'
18251 3' -62.8 NC_004681.1 + 34710 0.69 0.288552
Target:  5'- uCGGUGCGGgcuugggaauucCCGCgCgCUuCGGCCGCCg -3'
miRNA:   3'- -GCCACGCC------------GGCGgGaGGuGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 33860 0.69 0.302145
Target:  5'- uGGUGCGGaaGCUCccagCCGCGcucgGCCGCUu -3'
miRNA:   3'- gCCACGCCggCGGGa---GGUGC----UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 32124 0.73 0.173754
Target:  5'- gCGGUcaccGCGGCgGCCCacgCCaACGACCAgCu -3'
miRNA:   3'- -GCCA----CGCCGgCGGGa--GG-UGCUGGUgG- -5'
18251 3' -62.8 NC_004681.1 + 31184 0.7 0.250663
Target:  5'- aGcGUGCGGacugCGUCCUgCCAguuCGGCCGCCa -3'
miRNA:   3'- gC-CACGCCg---GCGGGA-GGU---GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 30948 0.77 0.091384
Target:  5'- gCGGgcgGCGuGCCGUCCUCCACGAUgGguCCg -3'
miRNA:   3'- -GCCa--CGC-CGGCGGGAGGUGCUGgU--GG- -5'
18251 3' -62.8 NC_004681.1 + 30259 0.7 0.253657
Target:  5'- aGGUccacuccGCGGCCGCgCCgccugagcccgacCCACaGGCCGCCu -3'
miRNA:   3'- gCCA-------CGCCGGCG-GGa------------GGUG-CUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 29465 0.67 0.369352
Target:  5'- gCGGUGaguCGGUCaCCCUgucccucaCCGgGACCACCu -3'
miRNA:   3'- -GCCAC---GCCGGcGGGA--------GGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 28251 0.74 0.141956
Target:  5'- cCGGUGCcgcuGCCGCCgcucgaUCCGCcGCCGCCg -3'
miRNA:   3'- -GCCACGc---CGGCGGg-----AGGUGcUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 27978 0.69 0.295287
Target:  5'- uGGU---GCCGCCCgagCCAUGuCCGCCa -3'
miRNA:   3'- gCCAcgcCGGCGGGa--GGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 25350 0.66 0.464338
Target:  5'- ---aGCGcacccaaccGCCGCCgCgggcgCCAUGGCCGCCg -3'
miRNA:   3'- gccaCGC---------CGGCGG-Ga----GGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 25158 0.79 0.058222
Target:  5'- aGGUGCcgcccgcGCCGCCCUCUGCGGUCACCg -3'
miRNA:   3'- gCCACGc------CGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 24953 0.76 0.096304
Target:  5'- aGGgagccuugGCGGCCGCCgC-CCGCG-CCGCCg -3'
miRNA:   3'- gCCa-------CGCCGGCGG-GaGGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 24839 0.67 0.377424
Target:  5'- uCGGcGuCGGCgGCgCgggCgGCGGCCGCCa -3'
miRNA:   3'- -GCCaC-GCCGgCGgGa--GgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 22517 0.71 0.238978
Target:  5'- gGGUGUagugcggagGGuuGCCgUCCGCGGCCggggugACCa -3'
miRNA:   3'- gCCACG---------CCggCGGgAGGUGCUGG------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.