miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 20137 0.67 0.377424
Target:  5'- aGGUagcGCGGCCaCCCgUCCugGucuCCGCg -3'
miRNA:   3'- gCCA---CGCCGGcGGG-AGGugCu--GGUGg -5'
18251 3' -62.8 NC_004681.1 + 19896 0.67 0.393919
Target:  5'- gCGGUacugGCGGCCGUUCUUaGCGgaGCCGCa -3'
miRNA:   3'- -GCCA----CGCCGGCGGGAGgUGC--UGGUGg -5'
18251 3' -62.8 NC_004681.1 + 19785 0.67 0.393919
Target:  5'- gGuGUGCGGCucCGCUaagaACGGCCGCCa -3'
miRNA:   3'- gC-CACGCCG--GCGGgaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 18500 0.73 0.165254
Target:  5'- gGGUGCgaaGGCguuUGCCg-CCGCGGCCGCCg -3'
miRNA:   3'- gCCACG---CCG---GCGGgaGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 18293 0.74 0.149367
Target:  5'- gGGUGC-GCCgggagGCgCUCCAgGACCGCCa -3'
miRNA:   3'- gCCACGcCGG-----CGgGAGGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 18056 0.67 0.41865
Target:  5'- gGGcUGCGgggcccaccggaGCCGCCCUCgGCacucaccugcgggGACCGCUu -3'
miRNA:   3'- gCC-ACGC------------CGGCGGGAGgUG-------------CUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 17926 0.77 0.086702
Target:  5'- uGGUGaGGCCgguGCCUUgCGCGGCCGCCg -3'
miRNA:   3'- gCCACgCCGG---CGGGAgGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 17497 0.73 0.171164
Target:  5'- uGGgGCGGCCGUCCaugauguugacgaggUCCuCGACCGCg -3'
miRNA:   3'- gCCaCGCCGGCGGG---------------AGGuGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 16526 0.73 0.169456
Target:  5'- gCGGgugGCGGCaacgGUCC-CCACGGCgGCCg -3'
miRNA:   3'- -GCCa--CGCCGg---CGGGaGGUGCUGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 16304 0.67 0.393919
Target:  5'- aGGcGUGGCCGUUCUgCuuGGCCugCu -3'
miRNA:   3'- gCCaCGCCGGCGGGAgGugCUGGugG- -5'
18251 3' -62.8 NC_004681.1 + 16241 0.67 0.41952
Target:  5'- aCGG-GaUGGCCGCCagcgCCGCGAa-GCCg -3'
miRNA:   3'- -GCCaC-GCCGGCGGga--GGUGCUggUGG- -5'
18251 3' -62.8 NC_004681.1 + 14543 0.67 0.410874
Target:  5'- aCGGggucgGCaucGCCGCCaccgccaCCACGGCCGCa -3'
miRNA:   3'- -GCCa----CGc--CGGCGGga-----GGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 12780 0.69 0.281937
Target:  5'- uCGGUG-GGUCGCUCcguUCuCACGGCgACCg -3'
miRNA:   3'- -GCCACgCCGGCGGG---AG-GUGCUGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 12602 0.7 0.250663
Target:  5'- gCGGUcucGCcguuGCUGCCUUCCGCGGUCACCu -3'
miRNA:   3'- -GCCA---CGc---CGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 11970 0.67 0.376611
Target:  5'- uCGGUGaCGucgguacGCUGCgCgcgCCGCGACUGCCa -3'
miRNA:   3'- -GCCAC-GC-------CGGCGgGa--GGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 10730 0.67 0.369352
Target:  5'- uGGUGCuGGgCGUCC---GCGACCACUg -3'
miRNA:   3'- gCCACG-CCgGCGGGaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 10298 0.68 0.3614
Target:  5'- aGGUGUGGCCgGUgCUCCACucggaGCCg -3'
miRNA:   3'- gCCACGCCGG-CGgGAGGUGcugg-UGG- -5'
18251 3' -62.8 NC_004681.1 + 9751 0.66 0.446103
Target:  5'- aGGUGaccCGGCC-CCCUCacgaACGucaGCUACCu -3'
miRNA:   3'- gCCAC---GCCGGcGGGAGg---UGC---UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 8518 0.77 0.086702
Target:  5'- aCGGUGaGaCCGCCC-CCGCGGCCAUCg -3'
miRNA:   3'- -GCCACgCcGGCGGGaGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 8407 0.67 0.40234
Target:  5'- gGGaUGUcguuguccaGGCCGUCCuuggcggcgUCCGCG-CCACCg -3'
miRNA:   3'- gCC-ACG---------CCGGCGGG---------AGGUGCuGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.