miRNA display CGI


Results 81 - 91 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 7678 0.7 0.247109
Target:  5'- aGGUGCcaucacggccuccccGGCCGUCCUCCACcguguaGACgACa -3'
miRNA:   3'- gCCACG---------------CCGGCGGGAGGUG------CUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 7301 0.68 0.330797
Target:  5'- cCGGcacCGGCCGCCUUCU-CGAgUACCu -3'
miRNA:   3'- -GCCac-GCCGGCGGGAGGuGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7263 0.67 0.369352
Target:  5'- ---cGCGGCCGUccaCCUCgGCGccgagugcGCCGCCu -3'
miRNA:   3'- gccaCGCCGGCG---GGAGgUGC--------UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7170 0.7 0.26907
Target:  5'- cCGGUGgGggguGCCGUCCUUCAUGG-CGCCg -3'
miRNA:   3'- -GCCACgC----CGGCGGGAGGUGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 6010 0.66 0.440711
Target:  5'- aGGUcuGCGGCgucuacgacauCGCCCcucccaucguccacaUCCugGACCguGCCa -3'
miRNA:   3'- gCCA--CGCCG-----------GCGGG---------------AGGugCUGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 5890 0.66 0.428275
Target:  5'- uGGgGCGGCCaGCguuCUUCCAC-AUCGCCg -3'
miRNA:   3'- gCCaCGCCGG-CG---GGAGGUGcUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 3640 0.66 0.437137
Target:  5'- ---aGCaGGCCGCCCUCgCcuucgACGucGCCGCCc -3'
miRNA:   3'- gccaCG-CCGGCGGGAG-G-----UGC--UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 3017 0.7 0.26907
Target:  5'- gCGGUGCcGUCGCCCagCCA-GGCCcCCa -3'
miRNA:   3'- -GCCACGcCGGCGGGa-GGUgCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 2130 1.1 0.000278
Target:  5'- gCGGUGCGGCCGCCCUCCACGACCACCu -3'
miRNA:   3'- -GCCACGCCGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 538 0.67 0.369352
Target:  5'- aGGUuggacgcccaGCGGagGCCCUCguCGuCCACCg -3'
miRNA:   3'- gCCA----------CGCCggCGGGAGguGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 511 0.68 0.32345
Target:  5'- uGGaccCGGCCaUCUUCCGCGGCCGCg -3'
miRNA:   3'- gCCac-GCCGGcGGGAGGUGCUGGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.