miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 38934 0.69 0.309124
Target:  5'- -----aGGuaGCCCUCCACGcuGCCGCCg -3'
miRNA:   3'- gccacgCCggCGGGAGGUGC--UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 49455 0.66 0.437137
Target:  5'- aGGUGUGcGCCcaguggucagcGCCCgCgGCG-CCGCCg -3'
miRNA:   3'- gCCACGC-CGG-----------CGGGaGgUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 61409 0.69 0.309124
Target:  5'- aCGGUGCGcuuGUCGCCCUCCuuggucucgaAgGAgCGCUg -3'
miRNA:   3'- -GCCACGC---CGGCGGGAGG----------UgCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 39349 0.68 0.353568
Target:  5'- ---cGCGGCgGCCCUUgGCGcCCuuGCCg -3'
miRNA:   3'- gccaCGCCGgCGGGAGgUGCuGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 11970 0.67 0.376611
Target:  5'- uCGGUGaCGucgguacGCUGCgCgcgCCGCGACUGCCa -3'
miRNA:   3'- -GCCAC-GC-------CGGCGgGa--GGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40241 0.66 0.464338
Target:  5'- gCGGcgucGCGGCCuGCCUgUCCcggGCGGUCACCg -3'
miRNA:   3'- -GCCa---CGCCGG-CGGG-AGG---UGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 35148 0.66 0.446103
Target:  5'- --cUGUGGuuGCCgUCCGCGGCgAgCa -3'
miRNA:   3'- gccACGCCggCGGgAGGUGCUGgUgG- -5'
18251 3' -62.8 NC_004681.1 + 5890 0.66 0.428275
Target:  5'- uGGgGCGGCCaGCguuCUUCCAC-AUCGCCg -3'
miRNA:   3'- gCCaCGCCGG-CG---GGAGGUGcUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 16241 0.67 0.41952
Target:  5'- aCGG-GaUGGCCGCCagcgCCGCGAa-GCCg -3'
miRNA:   3'- -GCCaC-GCCGGCGGga--GGUGCUggUGG- -5'
18251 3' -62.8 NC_004681.1 + 61766 0.67 0.41952
Target:  5'- ---gGCGGCgG-CCUCCGCGGCgGCg -3'
miRNA:   3'- gccaCGCCGgCgGGAGGUGCUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 18056 0.67 0.41865
Target:  5'- gGGcUGCGgggcccaccggaGCCGCCCUCgGCacucaccugcgggGACCGCUu -3'
miRNA:   3'- gCC-ACGC------------CGGCGGGAGgUG-------------CUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 16304 0.67 0.393919
Target:  5'- aGGcGUGGCCGUUCUgCuuGGCCugCu -3'
miRNA:   3'- gCCaCGCCGGCGGGAgGugCUGGugG- -5'
18251 3' -62.8 NC_004681.1 + 38331 0.66 0.446103
Target:  5'- aCGGUGCcuauggcGCCGCCgCgggacgUCUuCGGCCGCCc -3'
miRNA:   3'- -GCCACGc------CGGCGG-G------AGGuGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 49311 0.66 0.434467
Target:  5'- gCGG-GCGGucugcacaaccucaCCGUCCgCCACGGCggCGCCg -3'
miRNA:   3'- -GCCaCGCC--------------GGCGGGaGGUGCUG--GUGG- -5'
18251 3' -62.8 NC_004681.1 + 44582 0.66 0.428275
Target:  5'- ---cGCcGCCGCgCU-CGCGGCCGCCg -3'
miRNA:   3'- gccaCGcCGGCGgGAgGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 3640 0.66 0.437137
Target:  5'- ---aGCaGGCCGCCCUCgCcuucgACGucGCCGCCc -3'
miRNA:   3'- gccaCG-CCGGCGGGAG-G-----UGC--UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 45406 0.72 0.187235
Target:  5'- gCGGUgaaGCGcucagcaacuucGCCG-CCUCCAUGGCCGCCc -3'
miRNA:   3'- -GCCA---CGC------------CGGCgGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 6010 0.66 0.440711
Target:  5'- aGGUcuGCGGCgucuacgacauCGCCCcucccaucguccacaUCCugGACCguGCCa -3'
miRNA:   3'- gCCA--CGCCG-----------GCGGG---------------AGGugCUGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 50381 0.68 0.32345
Target:  5'- aGG-GCGGCUaCCgCUaCCACGACUACg -3'
miRNA:   3'- gCCaCGCCGGcGG-GA-GGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 511 0.68 0.32345
Target:  5'- uGGaccCGGCCaUCUUCCGCGGCCGCg -3'
miRNA:   3'- gCCac-GCCGGcGGGAGGUGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.