miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 64718 0.7 0.262816
Target:  5'- uGGUG-GGuCCGCCCaCCugGaACUACCc -3'
miRNA:   3'- gCCACgCC-GGCGGGaGGugC-UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 32124 0.73 0.173754
Target:  5'- gCGGUcaccGCGGCgGCCCacgCCaACGACCAgCu -3'
miRNA:   3'- -GCCA----CGCCGgCGGGa--GG-UGCUGGUgG- -5'
18251 3' -62.8 NC_004681.1 + 16526 0.73 0.169456
Target:  5'- gCGGgugGCGGCaacgGUCC-CCACGGCgGCCg -3'
miRNA:   3'- -GCCa--CGCCGg---CGGGaGGUGCUGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 45406 0.72 0.187235
Target:  5'- gCGGUgaaGCGcucagcaacuucGCCG-CCUCCAUGGCCGCCc -3'
miRNA:   3'- -GCCA---CGC------------CGGCgGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 29465 0.67 0.369352
Target:  5'- gCGGUGaguCGGUCaCCCUgucccucaCCGgGACCACCu -3'
miRNA:   3'- -GCCAC---GCCGGcGGGA--------GGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 37675 0.66 0.473601
Target:  5'- ---aGCGGCCGCgcgucgcuUCUCCAauuCCGCCa -3'
miRNA:   3'- gccaCGCCGGCG--------GGAGGUgcuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 69105 0.66 0.464338
Target:  5'- uGGUGUGaagcGCCGCCUcgcCCGCGcCCugGCCu -3'
miRNA:   3'- gCCACGC----CGGCGGGa--GGUGCuGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 47460 0.66 0.437137
Target:  5'- aCGaGUGCcaucaGGUCGCCgCgugCgACGGCCACUa -3'
miRNA:   3'- -GC-CACG-----CCGGCGG-Ga--GgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 6010 0.66 0.440711
Target:  5'- aGGUcuGCGGCgucuacgacauCGCCCcucccaucguccacaUCCugGACCguGCCa -3'
miRNA:   3'- gCCA--CGCCG-----------GCGGG---------------AGGugCUGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 3640 0.66 0.437137
Target:  5'- ---aGCaGGCCGCCCUCgCcuucgACGucGCCGCCc -3'
miRNA:   3'- gccaCG-CCGGCGGGAG-G-----UGC--UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 49311 0.66 0.434467
Target:  5'- gCGG-GCGGucugcacaaccucaCCGUCCgCCACGGCggCGCCg -3'
miRNA:   3'- -GCCaCGCC--------------GGCGGGaGGUGCUG--GUGG- -5'
18251 3' -62.8 NC_004681.1 + 44582 0.66 0.428275
Target:  5'- ---cGCcGCCGCgCU-CGCGGCCGCCg -3'
miRNA:   3'- gccaCGcCGGCGgGAgGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 60019 0.66 0.427394
Target:  5'- cCGGUG-GGCaccugcuCGCCUUCgGCGGCUcCCg -3'
miRNA:   3'- -GCCACgCCG-------GCGGGAGgUGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 41559 0.67 0.41952
Target:  5'- ---cGCGGCCGCCaugCaGCG-CCACCc -3'
miRNA:   3'- gccaCGCCGGCGGga-GgUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 14543 0.67 0.410874
Target:  5'- aCGGggucgGCaucGCCGCCaccgccaCCACGGCCGCa -3'
miRNA:   3'- -GCCa----CGc--CGGCGGga-----GGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 19785 0.67 0.393919
Target:  5'- gGuGUGCGGCucCGCUaagaACGGCCGCCa -3'
miRNA:   3'- gC-CACGCCG--GCGGgaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 74742 0.67 0.377424
Target:  5'- cCGGccGCGGgUGUCCUCCGCc-UCACCa -3'
miRNA:   3'- -GCCa-CGCCgGCGGGAGGUGcuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 24839 0.67 0.377424
Target:  5'- uCGGcGuCGGCgGCgCgggCgGCGGCCGCCa -3'
miRNA:   3'- -GCCaC-GCCGgCGgGa--GgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 45448 0.67 0.377424
Target:  5'- uCGGUGUGGUgaugaacgacagCGuCCaCUCCGagcUGGCCACCc -3'
miRNA:   3'- -GCCACGCCG------------GC-GG-GAGGU---GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7263 0.67 0.369352
Target:  5'- ---cGCGGCCGUccaCCUCgGCGccgagugcGCCGCCu -3'
miRNA:   3'- gccaCGCCGGCG---GGAGgUGC--------UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.