Results 81 - 91 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18251 | 3' | -62.8 | NC_004681.1 | + | 47460 | 0.66 | 0.437137 |
Target: 5'- aCGaGUGCcaucaGGUCGCCgCgugCgACGGCCACUa -3' miRNA: 3'- -GC-CACG-----CCGGCGG-Ga--GgUGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 3640 | 0.66 | 0.437137 |
Target: 5'- ---aGCaGGCCGCCCUCgCcuucgACGucGCCGCCc -3' miRNA: 3'- gccaCG-CCGGCGGGAG-G-----UGC--UGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 49311 | 0.66 | 0.434467 |
Target: 5'- gCGG-GCGGucugcacaaccucaCCGUCCgCCACGGCggCGCCg -3' miRNA: 3'- -GCCaCGCC--------------GGCGGGaGGUGCUG--GUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 44582 | 0.66 | 0.428275 |
Target: 5'- ---cGCcGCCGCgCU-CGCGGCCGCCg -3' miRNA: 3'- gccaCGcCGGCGgGAgGUGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 60019 | 0.66 | 0.427394 |
Target: 5'- cCGGUG-GGCaccugcuCGCCUUCgGCGGCUcCCg -3' miRNA: 3'- -GCCACgCCG-------GCGGGAGgUGCUGGuGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 41559 | 0.67 | 0.41952 |
Target: 5'- ---cGCGGCCGCCaugCaGCG-CCACCc -3' miRNA: 3'- gccaCGCCGGCGGga-GgUGCuGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 14543 | 0.67 | 0.410874 |
Target: 5'- aCGGggucgGCaucGCCGCCaccgccaCCACGGCCGCa -3' miRNA: 3'- -GCCa----CGc--CGGCGGga-----GGUGCUGGUGg -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 19785 | 0.67 | 0.393919 |
Target: 5'- gGuGUGCGGCucCGCUaagaACGGCCGCCa -3' miRNA: 3'- gC-CACGCCG--GCGGgaggUGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 74742 | 0.67 | 0.377424 |
Target: 5'- cCGGccGCGGgUGUCCUCCGCc-UCACCa -3' miRNA: 3'- -GCCa-CGCCgGCGGGAGGUGcuGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 24839 | 0.67 | 0.377424 |
Target: 5'- uCGGcGuCGGCgGCgCgggCgGCGGCCGCCa -3' miRNA: 3'- -GCCaC-GCCGgCGgGa--GgUGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 44137 | 0.66 | 0.473601 |
Target: 5'- aGGccGCgGGCCugGCCCUCaC-CGGCCGCg -3' miRNA: 3'- gCCa-CG-CCGG--CGGGAG-GuGCUGGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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