miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 5' -56.3 NC_004681.1 + 67138 0.66 0.75832
Target:  5'- gCGuGUuGGUGCUGGAgaugguGCCAGUgAGCUu -3'
miRNA:   3'- -GCcUAcCCACGACCU------CGGUUAgUCGG- -5'
18251 5' -56.3 NC_004681.1 + 10298 0.66 0.727768
Target:  5'- aGGuGUGgccGGUGCUccacucGGAGCCGGggaGGCCg -3'
miRNA:   3'- gCC-UAC---CCACGA------CCUCGGUUag-UCGG- -5'
18251 5' -56.3 NC_004681.1 + 16355 0.66 0.717388
Target:  5'- gCGGcgGUGGGUgGCgacgagGGcGCCAAguggguugccUCGGCCa -3'
miRNA:   3'- -GCC--UACCCA-CGa-----CCuCGGUU----------AGUCGG- -5'
18251 5' -56.3 NC_004681.1 + 16574 0.67 0.688992
Target:  5'- gCGGcgccgaguaguccGUGGGggGCUGGAacgccaccacGCCGAgaccaccaugggucaUCAGCCa -3'
miRNA:   3'- -GCC-------------UACCCa-CGACCU----------CGGUU---------------AGUCGG- -5'
18251 5' -56.3 NC_004681.1 + 35996 0.67 0.675172
Target:  5'- uCGGgcGGGauucGaggaUGGAGCCcgugcaucccAGUCAGCCg -3'
miRNA:   3'- -GCCuaCCCa---Cg---ACCUCGG----------UUAGUCGG- -5'
18251 5' -56.3 NC_004681.1 + 4237 0.68 0.610874
Target:  5'- aGcGAUGGGguUGUUGcGGGCCucagCGGCCu -3'
miRNA:   3'- gC-CUACCC--ACGAC-CUCGGuua-GUCGG- -5'
18251 5' -56.3 NC_004681.1 + 32809 0.69 0.568231
Target:  5'- aGGAcGGcGUGaaGGAGCUGAUCAGgCu -3'
miRNA:   3'- gCCUaCC-CACgaCCUCGGUUAGUCgG- -5'
18251 5' -56.3 NC_004681.1 + 25668 0.69 0.557676
Target:  5'- aGGGUauggccacaGGG-GC-GGGGCCAggcGUCGGCCu -3'
miRNA:   3'- gCCUA---------CCCaCGaCCUCGGU---UAGUCGG- -5'
18251 5' -56.3 NC_004681.1 + 40156 0.7 0.495755
Target:  5'- ---cUGGGUGCUGGcgucGGCCugcggGAUCGGCUu -3'
miRNA:   3'- gccuACCCACGACC----UCGG-----UUAGUCGG- -5'
18251 5' -56.3 NC_004681.1 + 51751 0.7 0.489727
Target:  5'- gGGGUGGGgaugacgucggaggGCUGGucuuGCCAGgUCcGCCa -3'
miRNA:   3'- gCCUACCCa-------------CGACCu---CGGUU-AGuCGG- -5'
18251 5' -56.3 NC_004681.1 + 43785 0.72 0.382705
Target:  5'- gCGGcgGGGUGUguuggaGGGGUUGAUCGGCg -3'
miRNA:   3'- -GCCuaCCCACGa-----CCUCGGUUAGUCGg -5'
18251 5' -56.3 NC_004681.1 + 12307 0.73 0.340923
Target:  5'- aCGGAUGaGGUgaccaucguGCUccaGGAGCCGGUCucGCCg -3'
miRNA:   3'- -GCCUAC-CCA---------CGA---CCUCGGUUAGu-CGG- -5'
18251 5' -56.3 NC_004681.1 + 2094 1.02 0.003474
Target:  5'- cCGGAUGGGUGCUGG-GCCAAUCAGCCc -3'
miRNA:   3'- -GCCUACCCACGACCuCGGUUAGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.