Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18254 | 3' | -54.5 | NC_004681.1 | + | 20158 | 0.67 | 0.728662 |
Target: 5'- aAGGUGCcggguccguAGCAGAgguAGCGCgGCCAc- -3' miRNA: 3'- -UCCGCGauu------UCGUCU---UCGCG-CGGUug -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 18209 | 0.66 | 0.780356 |
Target: 5'- cGGUGCcu-GGCcGggG-GCGCCGAUg -3' miRNA: 3'- uCCGCGauuUCGuCuuCgCGCGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 25371 | 0.67 | 0.728662 |
Target: 5'- cGGGCGaCUcaaccuuGUAGAAGCGCacCCAACc -3' miRNA: 3'- -UCCGC-GAuuu----CGUCUUCGCGc-GGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 30966 | 0.67 | 0.749713 |
Target: 5'- cGGgGCUccAGCGGGucggcgggcGGCGUGCCGu- -3' miRNA: 3'- uCCgCGAuuUCGUCU---------UCGCGCGGUug -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 25330 | 0.67 | 0.749713 |
Target: 5'- cGGGCGCcauGGCcgccguuguugaAGAAGCGgucgccgccguUGCCAGCg -3' miRNA: 3'- -UCCGCGauuUCG------------UCUUCGC-----------GCGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 39890 | 0.66 | 0.80003 |
Target: 5'- gAGGCGUggGAGGCgauGGucGCGCgGCgGGCg -3' miRNA: 3'- -UCCGCGa-UUUCG---UCuuCGCG-CGgUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 16149 | 0.66 | 0.774329 |
Target: 5'- -uGCGUUGcGGCGGAugcggugacagcggcGGCGCccuuGCCAGCa -3' miRNA: 3'- ucCGCGAUuUCGUCU---------------UCGCG----CGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 35635 | 0.66 | 0.770281 |
Target: 5'- cGGCGCaGAcGUGGGGuucgacaugguGCGCGCCGAg -3' miRNA: 3'- uCCGCGaUUuCGUCUU-----------CGCGCGGUUg -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 7360 | 0.66 | 0.760063 |
Target: 5'- cGGCGCcGAGGUGGAcGGCcGCGUCGu- -3' miRNA: 3'- uCCGCGaUUUCGUCU-UCG-CGCGGUug -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 25180 | 0.66 | 0.760063 |
Target: 5'- gAGGUGCcgagGAGGCugagcGAGGUGCcGCCcGCg -3' miRNA: 3'- -UCCGCGa---UUUCGu----CUUCGCG-CGGuUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 36272 | 0.67 | 0.749713 |
Target: 5'- cGGGCGCgggAAAcGCuaauacGGGAGCuguGCGCCGAa -3' miRNA: 3'- -UCCGCGa--UUU-CG------UCUUCG---CGCGGUUg -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 23789 | 0.66 | 0.80003 |
Target: 5'- cGGGCcacucuauguccGCgGAGGCGGgcGCGUaggagGCCAGCu -3' miRNA: 3'- -UCCG------------CGaUUUCGUCuuCGCG-----CGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 62556 | 0.66 | 0.790276 |
Target: 5'- cGGUGUcauccaggagaUGGAacGcCGGGAGCGCGCCGAg -3' miRNA: 3'- uCCGCG-----------AUUU--C-GUCUUCGCGCGGUUg -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 3092 | 0.66 | 0.794198 |
Target: 5'- cGGCGCcAAGcacgucccGCAGGAcuaccugaucggaucGCGCGcCCAGCg -3' miRNA: 3'- uCCGCGaUUU--------CGUCUU---------------CGCGC-GGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 53642 | 0.66 | 0.789291 |
Target: 5'- cGGCGCccuGGuCGGugucgucauccacAAGCGCGCCGGa -3' miRNA: 3'- uCCGCGauuUC-GUC-------------UUCGCGCGGUUg -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 48189 | 0.66 | 0.776344 |
Target: 5'- -cGCGCagcgaauaccuGGCcaAGAAGCGCGCCuACa -3' miRNA: 3'- ucCGCGauu--------UCG--UCUUCGCGCGGuUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 58073 | 0.71 | 0.50053 |
Target: 5'- uGGCGC----GUGGAAGCGCGCUgcAACg -3' miRNA: 3'- uCCGCGauuuCGUCUUCGCGCGG--UUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 39889 | 0.66 | 0.809606 |
Target: 5'- cAGGCG----GGCGGAGacccccagcGCGCGgCCAGCu -3' miRNA: 3'- -UCCGCgauuUCGUCUU---------CGCGC-GGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 34539 | 0.68 | 0.652526 |
Target: 5'- cGGGCGCc---GCGGuGGCGCGCUu-- -3' miRNA: 3'- -UCCGCGauuuCGUCuUCGCGCGGuug -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 59651 | 0.68 | 0.674538 |
Target: 5'- cGGGCGUccGAAGCGGuGGGCuuccaGCCAACa -3' miRNA: 3'- -UCCGCGa-UUUCGUC-UUCGcg---CGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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