miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18254 5' -51.9 NC_004681.1 + 18365 0.66 0.927566
Target:  5'- -cGGUGGCGCca--UCgacaUGGCAGGCc -3'
miRNA:   3'- caCCACUGCGucuaAGa---ACCGUUCGc -5'
18254 5' -51.9 NC_004681.1 + 44208 0.66 0.909023
Target:  5'- -gGGUGAgGCAGGUgccuuugUGGCGgugcuucucgaaGGCGg -3'
miRNA:   3'- caCCACUgCGUCUAaga----ACCGU------------UCGC- -5'
18254 5' -51.9 NC_004681.1 + 51523 0.66 0.909023
Target:  5'- aUGGUGGCGUAcg-UCgUGGCGuugAGCGc -3'
miRNA:   3'- cACCACUGCGUcuaAGaACCGU---UCGC- -5'
18254 5' -51.9 NC_004681.1 + 13362 0.67 0.872595
Target:  5'- aUGGccugGACGCGGaAUUC--GGCGAGCu -3'
miRNA:   3'- cACCa---CUGCGUC-UAAGaaCCGUUCGc -5'
18254 5' -51.9 NC_004681.1 + 30283 0.68 0.847636
Target:  5'- -cGGUGcCGUcaGGGUUCUUGGCGuaGGUc -3'
miRNA:   3'- caCCACuGCG--UCUAAGAACCGU--UCGc -5'
18254 5' -51.9 NC_004681.1 + 44153 0.68 0.838842
Target:  5'- gGUGGUGugGCAGGcccCgcagUGGgAGGUGu -3'
miRNA:   3'- -CACCACugCGUCUaa-Ga---ACCgUUCGC- -5'
18254 5' -51.9 NC_004681.1 + 15648 0.68 0.820596
Target:  5'- -cGGUGcCGguGAUcuUCUUGaCGAGCGa -3'
miRNA:   3'- caCCACuGCguCUA--AGAACcGUUCGC- -5'
18254 5' -51.9 NC_004681.1 + 3813 0.68 0.811163
Target:  5'- gGUuGUGGCGCugaugAGAUUCUugccUGGCAAGaCGg -3'
miRNA:   3'- -CAcCACUGCG-----UCUAAGA----ACCGUUC-GC- -5'
18254 5' -51.9 NC_004681.1 + 25051 0.68 0.811163
Target:  5'- -cGGUGAcCGCAGAgggcgGcGCGGGCGg -3'
miRNA:   3'- caCCACU-GCGUCUaagaaC-CGUUCGC- -5'
18254 5' -51.9 NC_004681.1 + 44807 0.71 0.675186
Target:  5'- gGUGGUGACGCg----CUUGGUgcGCGu -3'
miRNA:   3'- -CACCACUGCGucuaaGAACCGuuCGC- -5'
18254 5' -51.9 NC_004681.1 + 19111 0.72 0.597369
Target:  5'- -aGGUGuCGCcg--UCUUGGCGAGCa -3'
miRNA:   3'- caCCACuGCGucuaAGAACCGUUCGc -5'
18254 5' -51.9 NC_004681.1 + 4808 1.09 0.002798
Target:  5'- cGUGGUGACGCAGAUUCUUGGCAAGCGu -3'
miRNA:   3'- -CACCACUGCGUCUAAGAACCGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.