miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18255 5' -56 NC_004681.1 + 66587 0.66 0.76468
Target:  5'- aGAG-AGCGGAggUGGU-CGGCCUUGUUc -3'
miRNA:   3'- -UUCuUCGCCUa-GCCGuGCUGGAGCAG- -5'
18255 5' -56 NC_004681.1 + 32218 0.66 0.76468
Target:  5'- -uGGAGCaGGccAUCGcagcggcaGCGCGGCCUCGUg -3'
miRNA:   3'- uuCUUCG-CC--UAGC--------CGUGCUGGAGCAg -5'
18255 5' -56 NC_004681.1 + 31110 0.66 0.76468
Target:  5'- cAAGGAGCaGAUCGGCAC-ACCg---- -3'
miRNA:   3'- -UUCUUCGcCUAGCCGUGcUGGagcag -5'
18255 5' -56 NC_004681.1 + 47237 0.66 0.754624
Target:  5'- cAGAAcucGCGcaguUCGGCGCGGCCcucggcguucUCGUCg -3'
miRNA:   3'- uUCUU---CGCcu--AGCCGUGCUGG----------AGCAG- -5'
18255 5' -56 NC_004681.1 + 33398 0.66 0.734162
Target:  5'- ---cGGCGuacaccgCGGCGCGACCggCGUCg -3'
miRNA:   3'- uucuUCGCcua----GCCGUGCUGGa-GCAG- -5'
18255 5' -56 NC_004681.1 + 9919 0.66 0.734162
Target:  5'- -cGcuGCGGAcaaccUUGGUcuCGACCUCGUCc -3'
miRNA:   3'- uuCuuCGCCU-----AGCCGu-GCUGGAGCAG- -5'
18255 5' -56 NC_004681.1 + 56512 0.66 0.734162
Target:  5'- gAAGAAGUGGc-UGGaGCG-CCUCGUCa -3'
miRNA:   3'- -UUCUUCGCCuaGCCgUGCuGGAGCAG- -5'
18255 5' -56 NC_004681.1 + 2715 0.66 0.713307
Target:  5'- ----cGCGGA-CGGCGcCGAaCUCGUCg -3'
miRNA:   3'- uucuuCGCCUaGCCGU-GCUgGAGCAG- -5'
18255 5' -56 NC_004681.1 + 25680 0.67 0.702758
Target:  5'- cAGggGCGGGgccaGGCGuCGGCCUguaCGUg -3'
miRNA:   3'- uUCuuCGCCUag--CCGU-GCUGGA---GCAg -5'
18255 5' -56 NC_004681.1 + 27623 0.67 0.702758
Target:  5'- cGGGAugaaGGA-CGGUGCGACCUCGaUCu -3'
miRNA:   3'- -UUCUucg-CCUaGCCGUGCUGGAGC-AG- -5'
18255 5' -56 NC_004681.1 + 13231 0.67 0.692144
Target:  5'- cAAGAAGCaGAa--GCGCGACCgccgCGUCa -3'
miRNA:   3'- -UUCUUCGcCUagcCGUGCUGGa---GCAG- -5'
18255 5' -56 NC_004681.1 + 68584 0.67 0.681473
Target:  5'- cAGuGGCGGAauugaGGUuCGACUUCGUCa -3'
miRNA:   3'- uUCuUCGCCUag---CCGuGCUGGAGCAG- -5'
18255 5' -56 NC_004681.1 + 72264 0.67 0.660007
Target:  5'- -uGgcGCGGuauUCGGCAgCuGCCUUGUCa -3'
miRNA:   3'- uuCuuCGCCu--AGCCGU-GcUGGAGCAG- -5'
18255 5' -56 NC_004681.1 + 32018 0.68 0.627644
Target:  5'- -cGccGCGGGugUCGGCACGGCCggUGUg -3'
miRNA:   3'- uuCuuCGCCU--AGCCGUGCUGGa-GCAg -5'
18255 5' -56 NC_004681.1 + 32078 0.69 0.584587
Target:  5'- cGAGAAGCuGGAccCGGC-CGACaaggUCGUCa -3'
miRNA:   3'- -UUCUUCG-CCUa-GCCGuGCUGg---AGCAG- -5'
18255 5' -56 NC_004681.1 + 43908 0.69 0.584587
Target:  5'- -cGuAGCGGGggUgGGCGCgGACCUCGUg -3'
miRNA:   3'- uuCuUCGCCU--AgCCGUG-CUGGAGCAg -5'
18255 5' -56 NC_004681.1 + 46691 0.69 0.563253
Target:  5'- --cGAGUGGGcCGGuCugGGCUUCGUCa -3'
miRNA:   3'- uucUUCGCCUaGCC-GugCUGGAGCAG- -5'
18255 5' -56 NC_004681.1 + 63716 0.69 0.552663
Target:  5'- ----cGCGGuuGUCGGUGCGGuCCUCGUUg -3'
miRNA:   3'- uucuuCGCC--UAGCCGUGCU-GGAGCAG- -5'
18255 5' -56 NC_004681.1 + 30966 0.69 0.552663
Target:  5'- cGGGGcuccAGCGGGUCGGCgggcgGCGugC-CGUCc -3'
miRNA:   3'- -UUCU----UCGCCUAGCCG-----UGCugGaGCAG- -5'
18255 5' -56 NC_004681.1 + 59156 0.7 0.510974
Target:  5'- cGAGAAGCGGGaCGGCACcuACgUCGcCa -3'
miRNA:   3'- -UUCUUCGCCUaGCCGUGc-UGgAGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.