miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18256 3' -58.5 NC_004681.1 + 6458 0.66 0.620325
Target:  5'- aUCGGGcGUGGCGcccaagggcuGCAgCgCGGAGUUcGCg -3'
miRNA:   3'- aAGCCC-CACCGC----------UGU-G-GCCUCAAcUG- -5'
18256 3' -58.5 NC_004681.1 + 40497 0.66 0.599136
Target:  5'- cUCuGGGUGGaGACACCGGccacGcUGGCg -3'
miRNA:   3'- aAGcCCCACCgCUGUGGCCu---CaACUG- -5'
18256 3' -58.5 NC_004681.1 + 24982 0.66 0.588578
Target:  5'- -aCGGGGgcucUGGCGGCACaGGcGUcGGCg -3'
miRNA:   3'- aaGCCCC----ACCGCUGUGgCCuCAaCUG- -5'
18256 3' -58.5 NC_004681.1 + 42010 0.66 0.588578
Target:  5'- cUCGGGacagGUGGCGuuauucaguuugGCGCgGGAcagGUUGACa -3'
miRNA:   3'- aAGCCC----CACCGC------------UGUGgCCU---CAACUG- -5'
18256 3' -58.5 NC_004681.1 + 18090 0.67 0.578053
Target:  5'- -cCGGGGUGuGCGugAUCagcgGGAG-UGGCc -3'
miRNA:   3'- aaGCCCCAC-CGCugUGG----CCUCaACUG- -5'
18256 3' -58.5 NC_004681.1 + 45571 0.67 0.557135
Target:  5'- aUCaGGGUGGCca-GCuCGGAGUgGACg -3'
miRNA:   3'- aAGcCCCACCGcugUG-GCCUCAaCUG- -5'
18256 3' -58.5 NC_004681.1 + 30150 0.67 0.546756
Target:  5'- gUCGGGcucaGGCGGCGCggccgCGGAGUgGACc -3'
miRNA:   3'- aAGCCCca--CCGCUGUG-----GCCUCAaCUG- -5'
18256 3' -58.5 NC_004681.1 + 64936 0.68 0.485999
Target:  5'- -aCGaGGUGGCGACGCgccUGGAGcugGACg -3'
miRNA:   3'- aaGCcCCACCGCUGUG---GCCUCaa-CUG- -5'
18256 3' -58.5 NC_004681.1 + 52312 0.69 0.447325
Target:  5'- gUCGGGGaUGGCGGgGCCGuucUUGGCc -3'
miRNA:   3'- aAGCCCC-ACCGCUgUGGCcucAACUG- -5'
18256 3' -58.5 NC_004681.1 + 44568 0.69 0.437925
Target:  5'- -aUGGGGUGGCGACugACUGG-GUaGAa -3'
miRNA:   3'- aaGCCCCACCGCUG--UGGCCuCAaCUg -5'
18256 3' -58.5 NC_004681.1 + 51612 0.69 0.428639
Target:  5'- cUUCGGaGGUGGUGGCGUCGGuGUagccgagcUGGCg -3'
miRNA:   3'- -AAGCC-CCACCGCUGUGGCCuCA--------ACUG- -5'
18256 3' -58.5 NC_004681.1 + 59778 0.7 0.392692
Target:  5'- --gGGGcGUGGCGGCGCUGccauGUUGGCu -3'
miRNA:   3'- aagCCC-CACCGCUGUGGCcu--CAACUG- -5'
18256 3' -58.5 NC_004681.1 + 21552 0.71 0.350608
Target:  5'- cUCGGGGgcguaGGCauUGCCGGGGUUGAg -3'
miRNA:   3'- aAGCCCCa----CCGcuGUGGCCUCAACUg -5'
18256 3' -58.5 NC_004681.1 + 19182 0.71 0.334696
Target:  5'- gUCcuGGGUGGUGACGCCGGAugccucGACa -3'
miRNA:   3'- aAGc-CCCACCGCUGUGGCCUcaa---CUG- -5'
18256 3' -58.5 NC_004681.1 + 9449 0.71 0.32694
Target:  5'- -gCGGGGUGGUGACaACCGG----GACg -3'
miRNA:   3'- aaGCCCCACCGCUG-UGGCCucaaCUG- -5'
18256 3' -58.5 NC_004681.1 + 6359 1.06 0.001131
Target:  5'- gUUCGGGGUGGCGACACCGGAGUUGACc -3'
miRNA:   3'- -AAGCCCCACCGCUGUGGCCUCAACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.