miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18256 5' -56.8 NC_004681.1 + 17035 0.66 0.764299
Target:  5'- aGCGUCGAgcgcUUCGuuCUUgGCCUUCUGGa -3'
miRNA:   3'- -CGCAGCU----GAGCcuGAAgCGGAGGGUC- -5'
18256 5' -56.8 NC_004681.1 + 14562 0.66 0.754486
Target:  5'- gGCGgaggCGGCgcgCGcGGCgUUCGCCUCCg-- -3'
miRNA:   3'- -CGCa---GCUGa--GC-CUG-AAGCGGAGGguc -5'
18256 5' -56.8 NC_004681.1 + 11484 0.66 0.754486
Target:  5'- uGCGcaUCcGCUCguGGACUUCGUCagCCAGg -3'
miRNA:   3'- -CGC--AGcUGAG--CCUGAAGCGGagGGUC- -5'
18256 5' -56.8 NC_004681.1 + 39990 0.66 0.748542
Target:  5'- ---cCGGCUCGGccuugaaccagcgccGCUUgGCCUgCCAGg -3'
miRNA:   3'- cgcaGCUGAGCC---------------UGAAgCGGAgGGUC- -5'
18256 5' -56.8 NC_004681.1 + 29546 0.66 0.734525
Target:  5'- ---cCGGCUCGGGCaUCGCCg-CCAa -3'
miRNA:   3'- cgcaGCUGAGCCUGaAGCGGagGGUc -5'
18256 5' -56.8 NC_004681.1 + 34584 0.67 0.703903
Target:  5'- uGUG-CGcCUCGGugUaCGCCUCCUc- -3'
miRNA:   3'- -CGCaGCuGAGCCugAaGCGGAGGGuc -5'
18256 5' -56.8 NC_004681.1 + 11093 0.67 0.683151
Target:  5'- cGCGaaUCGACUUGG-CguagUCGCCcggguUCCCAc -3'
miRNA:   3'- -CGC--AGCUGAGCCuGa---AGCGG-----AGGGUc -5'
18256 5' -56.8 NC_004681.1 + 47982 0.67 0.672704
Target:  5'- cGCGUCGACUUcGACaagcaGCuCUCCUGGa -3'
miRNA:   3'- -CGCAGCUGAGcCUGaag--CG-GAGGGUC- -5'
18256 5' -56.8 NC_004681.1 + 8950 0.68 0.651712
Target:  5'- aGCGuUCGAC-CGG-CUUcacCGCCUCCuCGGc -3'
miRNA:   3'- -CGC-AGCUGaGCCuGAA---GCGGAGG-GUC- -5'
18256 5' -56.8 NC_004681.1 + 40147 0.68 0.624335
Target:  5'- gGCGUCGGCcugCGGgaucgGCUUCGCCcugacgucugcguauUCCUGGc -3'
miRNA:   3'- -CGCAGCUGa--GCC-----UGAAGCGG---------------AGGGUC- -5'
18256 5' -56.8 NC_004681.1 + 18028 0.68 0.609602
Target:  5'- -aGUaCGGCUCGGGCaaCGCCUCaCGGc -3'
miRNA:   3'- cgCA-GCUGAGCCUGaaGCGGAGgGUC- -5'
18256 5' -56.8 NC_004681.1 + 24841 0.68 0.60855
Target:  5'- gGCGUCGGCggcgCGGGCggCGgccgccaaggcucCCUCaCCAGc -3'
miRNA:   3'- -CGCAGCUGa---GCCUGaaGC-------------GGAG-GGUC- -5'
18256 5' -56.8 NC_004681.1 + 65410 0.69 0.578175
Target:  5'- -aGUCGACggaGGACggUCauCCUCCCAGu -3'
miRNA:   3'- cgCAGCUGag-CCUGa-AGc-GGAGGGUC- -5'
18256 5' -56.8 NC_004681.1 + 50850 0.71 0.467383
Target:  5'- gGUGgCGGCUCGGACUU-GCUcgauggucaUCCCGGg -3'
miRNA:   3'- -CGCaGCUGAGCCUGAAgCGG---------AGGGUC- -5'
18256 5' -56.8 NC_004681.1 + 14701 0.72 0.411698
Target:  5'- cCGUCGACUCGaAC-UCGCCagCCAGc -3'
miRNA:   3'- cGCAGCUGAGCcUGaAGCGGagGGUC- -5'
18256 5' -56.8 NC_004681.1 + 6325 1.1 0.001124
Target:  5'- uGCGUCGACUCGGACUUCGCCUCCCAGu -3'
miRNA:   3'- -CGCAGCUGAGCCUGAAGCGGAGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.