miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18259 3' -51 NC_004681.1 + 60832 0.66 0.945445
Target:  5'- ---aCGcGCCACCGGaaucggcguaggUGUCACGcGGGGu -3'
miRNA:   3'- aaaaGC-UGGUGGCU------------ACAGUGUuCCCU- -5'
18259 3' -51 NC_004681.1 + 12521 0.66 0.935246
Target:  5'- ----aGACCGCCGA-GUCGCAGGc-- -3'
miRNA:   3'- aaaagCUGGUGGCUaCAGUGUUCccu -5'
18259 3' -51 NC_004681.1 + 35477 0.66 0.934164
Target:  5'- ---cCGGCCACCGGUGgcuuggacgcaGCGAGGa- -3'
miRNA:   3'- aaaaGCUGGUGGCUACag---------UGUUCCcu -5'
18259 3' -51 NC_004681.1 + 2408 0.67 0.929721
Target:  5'- ---cCGACCucggugcauUCGAUGUCAuCGAGGGu -3'
miRNA:   3'- aaaaGCUGGu--------GGCUACAGU-GUUCCCu -5'
18259 3' -51 NC_004681.1 + 47401 0.67 0.91144
Target:  5'- ---gCGGuCCugCGAcGUCGuCAAGGGAu -3'
miRNA:   3'- aaaaGCU-GGugGCUaCAGU-GUUCCCU- -5'
18259 3' -51 NC_004681.1 + 2043 0.68 0.883144
Target:  5'- ---gCGGCCgcACCGcgGacauccUCACGAGGGAa -3'
miRNA:   3'- aaaaGCUGG--UGGCuaC------AGUGUUCCCU- -5'
18259 3' -51 NC_004681.1 + 20267 0.68 0.867385
Target:  5'- --gUCGAUCACCGAg--CGCAGccGGGGc -3'
miRNA:   3'- aaaAGCUGGUGGCUacaGUGUU--CCCU- -5'
18259 3' -51 NC_004681.1 + 27472 0.69 0.850619
Target:  5'- aUUUCGAUCACCGggGUucCGCcguuGAGGGu -3'
miRNA:   3'- aAAAGCUGGUGGCuaCA--GUG----UUCCCu -5'
18259 3' -51 NC_004681.1 + 35737 0.71 0.711428
Target:  5'- aUUUCGugUgucgggaagcgcGCCGAUggGUUACAGGGGAg -3'
miRNA:   3'- aAAAGCugG------------UGGCUA--CAGUGUUCCCU- -5'
18259 3' -51 NC_004681.1 + 67327 0.72 0.700499
Target:  5'- --cUCGACCugGCCG-UGUCGCAGGGc- -3'
miRNA:   3'- aaaAGCUGG--UGGCuACAGUGUUCCcu -5'
18259 3' -51 NC_004681.1 + 34738 0.73 0.622719
Target:  5'- -cUUCGGCCGCCGccccuUGUCGaagUAGGGGGc -3'
miRNA:   3'- aaAAGCUGGUGGCu----ACAGU---GUUCCCU- -5'
18259 3' -51 NC_004681.1 + 7767 1.07 0.005241
Target:  5'- cUUUUCGACCACCGAUGUCACAAGGGAu -3'
miRNA:   3'- -AAAAGCUGGUGGCUACAGUGUUCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.