Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18260 | 5' | -52 | NC_004681.1 | + | 8039 | 1.13 | 0.001813 |
Target: 5'- uCAAACAGAGAGGGCUCUUCGACCACCa -3' miRNA: 3'- -GUUUGUCUCUCCCGAGAAGCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 20555 | 0.75 | 0.45125 |
Target: 5'- -cAGCGGAGuuAGGGCgg--CGACCACCu -3' miRNA: 3'- guUUGUCUC--UCCCGagaaGCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 9607 | 0.74 | 0.554823 |
Target: 5'- -cAGCAGGccGAGGcGCUCUUCGGCgCGCa -3' miRNA: 3'- guUUGUCU--CUCC-CGAGAAGCUG-GUGg -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 62521 | 0.73 | 0.565625 |
Target: 5'- -cGGCGGAGAGGGCggugUCGGCgcccaGCCa -3' miRNA: 3'- guUUGUCUCUCCCGaga-AGCUGg----UGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 54644 | 0.72 | 0.653269 |
Target: 5'- cCGGGCGGAugauGaAGGGCUCUgcggugaucUCGgGCCACCg -3' miRNA: 3'- -GUUUGUCU----C-UCCCGAGA---------AGC-UGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 2978 | 0.72 | 0.66424 |
Target: 5'- uCGAGCGGgaGGGGGGCUUcgucacggUCGAgCGCCu -3' miRNA: 3'- -GUUUGUC--UCUCCCGAGa-------AGCUgGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 17949 | 0.71 | 0.686081 |
Target: 5'- --uGCcGAGGGcGGCUCcgUgGGCCACCg -3' miRNA: 3'- guuUGuCUCUC-CCGAGa-AgCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 45174 | 0.7 | 0.760307 |
Target: 5'- --cGCGGcGAGGGC-C-UCGACCGCg -3' miRNA: 3'- guuUGUCuCUCCCGaGaAGCUGGUGg -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 7489 | 0.7 | 0.769467 |
Target: 5'- -cGACGGAcuugggcGGGGGCuUCUucUCGGCCGCg -3' miRNA: 3'- guUUGUCU-------CUCCCG-AGA--AGCUGGUGg -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 53358 | 0.69 | 0.790381 |
Target: 5'- -----cGGGAGGGCUauacccUUGGCCGCCu -3' miRNA: 3'- guuuguCUCUCCCGAga----AGCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 45778 | 0.69 | 0.809625 |
Target: 5'- uCAAAC-GAGcAGGGUcCaUCGACUACCu -3' miRNA: 3'- -GUUUGuCUC-UCCCGaGaAGCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 23472 | 0.69 | 0.809625 |
Target: 5'- gCGAACguGGAGGcGGGCaggaggUUGACCACCu -3' miRNA: 3'- -GUUUG--UCUCU-CCCGaga---AGCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 18288 | 0.69 | 0.818973 |
Target: 5'- --cGCcGGGAGGcGCUCcagGACCGCCa -3' miRNA: 3'- guuUGuCUCUCC-CGAGaagCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 59009 | 0.68 | 0.833518 |
Target: 5'- -cGugGGGGAGGGCgcccaccgcgaaUUUGACCACg -3' miRNA: 3'- guUugUCUCUCCCGag----------AAGCUGGUGg -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 57927 | 0.68 | 0.837072 |
Target: 5'- gAGAgGGAGGGGccagccccGCUcCUUCG-CCACCu -3' miRNA: 3'- gUUUgUCUCUCC--------CGA-GAAGCuGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 50326 | 0.68 | 0.845803 |
Target: 5'- aCAAGCc--GAGGGCgccauuggagCUggCGACCACCu -3' miRNA: 3'- -GUUUGucuCUCCCGa---------GAa-GCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 58826 | 0.67 | 0.878405 |
Target: 5'- cCGGACAGAGGccaacaacCUCUUCGACCcgcACCa -3' miRNA: 3'- -GUUUGUCUCUccc-----GAGAAGCUGG---UGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 9124 | 0.67 | 0.885939 |
Target: 5'- -uGGCGuuGcGGGCUCguaccCGACCGCCg -3' miRNA: 3'- guUUGUcuCuCCCGAGaa---GCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 7783 | 0.67 | 0.893214 |
Target: 5'- -uGACGGAcuuGGucgaCUUUUCGACCACCg -3' miRNA: 3'- guUUGUCUcu-CCc---GAGAAGCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 67294 | 0.67 | 0.899535 |
Target: 5'- --uACGGGGAGGGCaucucgcgugaggUCgaacuccUCGACCugGCCg -3' miRNA: 3'- guuUGUCUCUCCCG-------------AGa------AGCUGG--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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