Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18260 | 5' | -52 | NC_004681.1 | + | 57927 | 0.68 | 0.837072 |
Target: 5'- gAGAgGGAGGGGccagccccGCUcCUUCG-CCACCu -3' miRNA: 3'- gUUUgUCUCUCC--------CGA-GAAGCuGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 58826 | 0.67 | 0.878405 |
Target: 5'- cCGGACAGAGGccaacaacCUCUUCGACCcgcACCa -3' miRNA: 3'- -GUUUGUCUCUccc-----GAGAAGCUGG---UGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 59009 | 0.68 | 0.833518 |
Target: 5'- -cGugGGGGAGGGCgcccaccgcgaaUUUGACCACg -3' miRNA: 3'- guUugUCUCUCCCGag----------AAGCUGGUGg -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 62521 | 0.73 | 0.565625 |
Target: 5'- -cGGCGGAGAGGGCggugUCGGCgcccaGCCa -3' miRNA: 3'- guUUGUCUCUCCCGaga-AGCUGg----UGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 67294 | 0.67 | 0.899535 |
Target: 5'- --uACGGGGAGGGCaucucgcgugaggUCgaacuccUCGACCugGCCg -3' miRNA: 3'- guuUGUCUCUCCCG-------------AGa------AGCUGG--UGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 69637 | 0.66 | 0.931198 |
Target: 5'- aCuuGCAGucGGGGCa---CGGCCGCCg -3' miRNA: 3'- -GuuUGUCucUCCCGagaaGCUGGUGG- -5' |
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18260 | 5' | -52 | NC_004681.1 | + | 75793 | 0.66 | 0.911524 |
Target: 5'- gCAGGuCAGAGGGGGUgggggugguugcggUCUcgaaaUCG-CCGCCu -3' miRNA: 3'- -GUUU-GUCUCUCCCG--------------AGA-----AGCuGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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