miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18261 3' -57.8 NC_004681.1 + 9237 0.66 0.719925
Target:  5'- -cGCGCGACuGggagcUCCUGcGCCuGACGAa -3'
miRNA:   3'- gcUGCGCUGuCac---AGGAC-CGG-CUGCU- -5'
18261 3' -57.8 NC_004681.1 + 9588 0.66 0.709745
Target:  5'- uCGGCGCGcACGGUGaCCUuGCCaucaACGAa -3'
miRNA:   3'- -GCUGCGC-UGUCACaGGAcCGGc---UGCU- -5'
18261 3' -57.8 NC_004681.1 + 5297 0.66 0.699496
Target:  5'- uGugGCGACAGcucggCCaUGGCgGGCGc -3'
miRNA:   3'- gCugCGCUGUCaca--GG-ACCGgCUGCu -5'
18261 3' -57.8 NC_004681.1 + 51555 0.66 0.689187
Target:  5'- uGAgGCGACGcUG-CCUGGCUuuguccuuGACGAu -3'
miRNA:   3'- gCUgCGCUGUcACaGGACCGG--------CUGCU- -5'
18261 3' -57.8 NC_004681.1 + 10585 0.66 0.689187
Target:  5'- gGACaaagGUGACGGUGUCCUcaCCGAUGc -3'
miRNA:   3'- gCUG----CGCUGUCACAGGAccGGCUGCu -5'
18261 3' -57.8 NC_004681.1 + 16529 0.66 0.678829
Target:  5'- gGugGCGGCAacgGUCCccacggcGGCCGugGu -3'
miRNA:   3'- gCugCGCUGUca-CAGGa------CCGGCugCu -5'
18261 3' -57.8 NC_004681.1 + 1285 0.66 0.678829
Target:  5'- gGGCGCc-CAGgaaGUCugggacgagCUGGCCGACGAc -3'
miRNA:   3'- gCUGCGcuGUCa--CAG---------GACCGGCUGCU- -5'
18261 3' -57.8 NC_004681.1 + 11357 0.66 0.668431
Target:  5'- gGACGuUGAUgaGGcUGgcgaCCUGGCUGACGAa -3'
miRNA:   3'- gCUGC-GCUG--UC-ACa---GGACCGGCUGCU- -5'
18261 3' -57.8 NC_004681.1 + 49579 0.66 0.668431
Target:  5'- cCGGCGacugGGCAGUagggcuugccGUCCUuguagcgggGGCCGugGAa -3'
miRNA:   3'- -GCUGCg---CUGUCA----------CAGGA---------CCGGCugCU- -5'
18261 3' -57.8 NC_004681.1 + 65602 0.67 0.647551
Target:  5'- uCGAUGuCGAUAGUGaggaUUUUGGCCGucACGAc -3'
miRNA:   3'- -GCUGC-GCUGUCAC----AGGACCGGC--UGCU- -5'
18261 3' -57.8 NC_004681.1 + 46429 0.67 0.637088
Target:  5'- uGAUGCccagcuuccACAGUG-CCUGGCCcACGAu -3'
miRNA:   3'- gCUGCGc--------UGUCACaGGACCGGcUGCU- -5'
18261 3' -57.8 NC_004681.1 + 61879 0.68 0.584875
Target:  5'- uGAUugGCGACguAGaGcUCCUGGCCGAUGGc -3'
miRNA:   3'- gCUG--CGCUG--UCaC-AGGACCGGCUGCU- -5'
18261 3' -57.8 NC_004681.1 + 16743 0.68 0.564186
Target:  5'- aGACccuCGAgGGUGUCCgGGCUGAUGc -3'
miRNA:   3'- gCUGc--GCUgUCACAGGaCCGGCUGCu -5'
18261 3' -57.8 NC_004681.1 + 18220 0.68 0.553913
Target:  5'- cCGACcUGACccGGUG-CCUGGCCGGgGGc -3'
miRNA:   3'- -GCUGcGCUG--UCACaGGACCGGCUgCU- -5'
18261 3' -57.8 NC_004681.1 + 30158 0.68 0.553913
Target:  5'- -uGCGCGACAGcgGgagcUCCgaGGCCGAUGGc -3'
miRNA:   3'- gcUGCGCUGUCa-C----AGGa-CCGGCUGCU- -5'
18261 3' -57.8 NC_004681.1 + 21291 0.69 0.493659
Target:  5'- aGugGCGACGcUGUCCauucGGCCGuuaauCGAa -3'
miRNA:   3'- gCugCGCUGUcACAGGa---CCGGCu----GCU- -5'
18261 3' -57.8 NC_004681.1 + 52304 0.7 0.483899
Target:  5'- uGGCGgGGCcGU-UCUUGGCCGugGAu -3'
miRNA:   3'- gCUGCgCUGuCAcAGGACCGGCugCU- -5'
18261 3' -57.8 NC_004681.1 + 6521 0.77 0.176828
Target:  5'- aGACGCGACAGgaGUgCUGGCCGGuCGc -3'
miRNA:   3'- gCUGCGCUGUCa-CAgGACCGGCU-GCu -5'
18261 3' -57.8 NC_004681.1 + 52272 0.78 0.159414
Target:  5'- gCGACGCgGACGuUGUCCUccuccuccagaaGGCCGACGAc -3'
miRNA:   3'- -GCUGCG-CUGUcACAGGA------------CCGGCUGCU- -5'
18261 3' -57.8 NC_004681.1 + 9155 1.09 0.001035
Target:  5'- gCGACGCGACAGUGUCCUGGCCGACGAa -3'
miRNA:   3'- -GCUGCGCUGUCACAGGACCGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.