miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18261 5' -56.1 NC_004681.1 + 41764 0.66 0.781522
Target:  5'- aUGCCGaCCGCGcuGAACauggUCACGUa- -3'
miRNA:   3'- -ACGGCaGGCGCccCUUGa---AGUGCAac -5'
18261 5' -56.1 NC_004681.1 + 30749 0.66 0.780557
Target:  5'- cGgCGUCCGCGGG-AAUcucgcuccaguggUUCACGUc- -3'
miRNA:   3'- aCgGCAGGCGCCCcUUG-------------AAGUGCAac -5'
18261 5' -56.1 NC_004681.1 + 2729 0.66 0.771808
Target:  5'- gUGCCGUCCGCGGcGuGAACg-------- -3'
miRNA:   3'- -ACGGCAGGCGCC-C-CUUGaagugcaac -5'
18261 5' -56.1 NC_004681.1 + 44850 0.66 0.741894
Target:  5'- aGCCGcCCGCGaGGGAGuCcUCgACGUc- -3'
miRNA:   3'- aCGGCaGGCGC-CCCUU-GaAG-UGCAac -5'
18261 5' -56.1 NC_004681.1 + 8155 0.67 0.711041
Target:  5'- uUGuuGUUCaguaGCGGGGAugUUCAauccUGUUGu -3'
miRNA:   3'- -ACggCAGG----CGCCCCUugAAGU----GCAAC- -5'
18261 5' -56.1 NC_004681.1 + 22463 0.67 0.708957
Target:  5'- cGUCGgggagguccucgCCGUGGGGGAUUUCACc--- -3'
miRNA:   3'- aCGGCa-----------GGCGCCCCUUGAAGUGcaac -5'
18261 5' -56.1 NC_004681.1 + 20049 0.67 0.679531
Target:  5'- aGCgGugauuUCCGCGGGGAGCaccugCGUGUUGa -3'
miRNA:   3'- aCGgC-----AGGCGCCCCUUGaa---GUGCAAC- -5'
18261 5' -56.1 NC_004681.1 + 54696 0.68 0.641237
Target:  5'- gUGCCGUCgauguccacgaugauUGCGGGGGGCagCugGcUGa -3'
miRNA:   3'- -ACGGCAG---------------GCGCCCCUUGaaGugCaAC- -5'
18261 5' -56.1 NC_004681.1 + 55023 0.68 0.636968
Target:  5'- gGUCGcgCC-CGGGGAACUUCugACGUa- -3'
miRNA:   3'- aCGGCa-GGcGCCCCUUGAAG--UGCAac -5'
18261 5' -56.1 NC_004681.1 + 14084 0.69 0.594335
Target:  5'- cGCCuugaGUUgGgCGGGGGACUUCAUcaGUUGa -3'
miRNA:   3'- aCGG----CAGgC-GCCCCUUGAAGUG--CAAC- -5'
18261 5' -56.1 NC_004681.1 + 28220 0.7 0.521156
Target:  5'- cGCCGUugcCCGCGGGGccgucGCUggUCcCGUUGu -3'
miRNA:   3'- aCGGCA---GGCGCCCCu----UGA--AGuGCAAC- -5'
18261 5' -56.1 NC_004681.1 + 11925 0.7 0.521156
Target:  5'- gUGUCGUCCGUcGaGAACUUCGgGUUGa -3'
miRNA:   3'- -ACGGCAGGCGcCcCUUGAAGUgCAAC- -5'
18261 5' -56.1 NC_004681.1 + 16570 0.7 0.500857
Target:  5'- cGCCGaguagUCCGUGGGGGGCUggaACGc-- -3'
miRNA:   3'- aCGGC-----AGGCGCCCCUUGAag-UGCaac -5'
18261 5' -56.1 NC_004681.1 + 22500 0.71 0.461365
Target:  5'- uUGCCGUCCGCGGccGGggUgaccaGCGUc- -3'
miRNA:   3'- -ACGGCAGGCGCC--CCuuGaag--UGCAac -5'
18261 5' -56.1 NC_004681.1 + 71657 0.75 0.285661
Target:  5'- gGCCGUCCGCGcGGAACU-CACa--- -3'
miRNA:   3'- aCGGCAGGCGCcCCUUGAaGUGcaac -5'
18261 5' -56.1 NC_004681.1 + 35142 0.78 0.185686
Target:  5'- uUGCCGUCCGCGGcGAGCaagUCugGUa- -3'
miRNA:   3'- -ACGGCAGGCGCCcCUUGa--AGugCAac -5'
18261 5' -56.1 NC_004681.1 + 9117 1.08 0.001661
Target:  5'- gUGCCGUCCGCGGGGAACUUCACGUUGc -3'
miRNA:   3'- -ACGGCAGGCGCCCCUUGAAGUGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.