miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18262 5' -52.9 NC_004681.1 + 2327 0.66 0.903466
Target:  5'- ---aGGUCGgcgcccacuUCUGCGUGccgCGCGCCa -3'
miRNA:   3'- acaaCCAGU---------AGACGUACca-GUGCGGg -5'
18262 5' -52.9 NC_004681.1 + 22923 0.66 0.903466
Target:  5'- ---aGGaUCAUCggagGCggGGUCGC-CCCg -3'
miRNA:   3'- acaaCC-AGUAGa---CGuaCCAGUGcGGG- -5'
18262 5' -52.9 NC_004681.1 + 15297 0.66 0.896598
Target:  5'- cGUUGGgguccuUCAgCUGCuUGGacagCGCGUCCa -3'
miRNA:   3'- aCAACC------AGUaGACGuACCa---GUGCGGG- -5'
18262 5' -52.9 NC_004681.1 + 32231 0.66 0.874423
Target:  5'- --cUGGUCGUUgGCGUGGgC-CGCCg -3'
miRNA:   3'- acaACCAGUAGaCGUACCaGuGCGGg -5'
18262 5' -52.9 NC_004681.1 + 29254 0.66 0.871294
Target:  5'- gGUUGGUCGUUgaCGUGGccguugaggucgcCACGCCUg -3'
miRNA:   3'- aCAACCAGUAGacGUACCa------------GUGCGGG- -5'
18262 5' -52.9 NC_004681.1 + 75007 0.67 0.85001
Target:  5'- ---cGuGUCGUCUGCuuUGGUCACGgUg -3'
miRNA:   3'- acaaC-CAGUAGACGu-ACCAGUGCgGg -5'
18262 5' -52.9 NC_004681.1 + 41832 0.67 0.832585
Target:  5'- ---cGGUCGUagaUGUcgGUGGUCAugaUGCCCu -3'
miRNA:   3'- acaaCCAGUAg--ACG--UACCAGU---GCGGG- -5'
18262 5' -52.9 NC_004681.1 + 52013 0.68 0.814322
Target:  5'- --gUGGUCucccgCUGCcgGGUgCGCaaGCCCa -3'
miRNA:   3'- acaACCAGua---GACGuaCCA-GUG--CGGG- -5'
18262 5' -52.9 NC_004681.1 + 6040 0.68 0.814322
Target:  5'- ---cGGUCAaCUGCAgcggaaUGGgcucCAUGCCCu -3'
miRNA:   3'- acaaCCAGUaGACGU------ACCa---GUGCGGG- -5'
18262 5' -52.9 NC_004681.1 + 58918 0.68 0.8049
Target:  5'- uUGUUGGcC-UCUGuCcgGGUgAgGCCCa -3'
miRNA:   3'- -ACAACCaGuAGAC-GuaCCAgUgCGGG- -5'
18262 5' -52.9 NC_004681.1 + 16446 0.69 0.765519
Target:  5'- --aUGGUgGUCUcgGCGUGGUgGCGUUCc -3'
miRNA:   3'- acaACCAgUAGA--CGUACCAgUGCGGG- -5'
18262 5' -52.9 NC_004681.1 + 15753 0.75 0.43737
Target:  5'- cGUUGG-CGUCUGCGUGaGccUCGCGCgCg -3'
miRNA:   3'- aCAACCaGUAGACGUAC-C--AGUGCGgG- -5'
18262 5' -52.9 NC_004681.1 + 9543 1.12 0.001516
Target:  5'- cUGUUGGUCAUCUGCAUGGUCACGCCCu -3'
miRNA:   3'- -ACAACCAGUAGACGUACCAGUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.