miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18263 5' -51.8 NC_004681.1 + 39196 0.66 0.945382
Target:  5'- gCCCUCGacgucgaGGACGUCAGcCUGgUcgACUGu -3'
miRNA:   3'- -GGGAGUg------CUUGCAGUC-GAUgGa-UGAC- -5'
18263 5' -51.8 NC_004681.1 + 65928 0.66 0.945382
Target:  5'- uCCCUCACGGugG-CA-CUgACCU-CUGg -3'
miRNA:   3'- -GGGAGUGCUugCaGUcGA-UGGAuGAC- -5'
18263 5' -51.8 NC_004681.1 + 44760 0.67 0.918323
Target:  5'- uCCCUCGCGGGCGgcuUCAacucGUgggACCU-CUGg -3'
miRNA:   3'- -GGGAGUGCUUGC---AGU----CGa--UGGAuGAC- -5'
18263 5' -51.8 NC_004681.1 + 10010 0.67 0.905586
Target:  5'- aUCUUCGgGGaagGCGUCGGCcAgCUGCUGg -3'
miRNA:   3'- -GGGAGUgCU---UGCAGUCGaUgGAUGAC- -5'
18263 5' -51.8 NC_004681.1 + 32976 0.68 0.869112
Target:  5'- aCCCguaccgCGCGAAgggUGUCAGCUACCc---- -3'
miRNA:   3'- -GGGa-----GUGCUU---GCAGUCGAUGGaugac -5'
18263 5' -51.8 NC_004681.1 + 40865 0.68 0.852774
Target:  5'- gUCCUCGCGGuacaAgGUgGGCUuaACCUGCUu -3'
miRNA:   3'- -GGGAGUGCU----UgCAgUCGA--UGGAUGAc -5'
18263 5' -51.8 NC_004681.1 + 10616 0.7 0.768962
Target:  5'- aCgUCACGGACGUCuccCUGCCUgaugccACUGa -3'
miRNA:   3'- gGgAGUGCUUGCAGuc-GAUGGA------UGAC- -5'
18263 5' -51.8 NC_004681.1 + 14531 0.75 0.484837
Target:  5'- gCCUCGCGGGCGgcguagauuuucgccUCGGCcGCCUGCUu -3'
miRNA:   3'- gGGAGUGCUUGC---------------AGUCGaUGGAUGAc -5'
18263 5' -51.8 NC_004681.1 + 9739 1.12 0.002346
Target:  5'- cCCCUCACGAACGUCAGCUACCUACUGg -3'
miRNA:   3'- -GGGAGUGCUUGCAGUCGAUGGAUGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.