miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18264 5' -59.2 NC_004681.1 + 12391 0.69 0.469965
Target:  5'- aCCaCCACCgCGGCgacgcucgucggugAGCCggugacgGACGAGGa -3'
miRNA:   3'- -GG-GGUGG-GCCG--------------UCGGagaa---CUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 32689 0.69 0.444748
Target:  5'- aCCCCGCCgacguCGcGCGGCUggugGAUGAGGa -3'
miRNA:   3'- -GGGGUGG-----GC-CGUCGGagaaCUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 48345 0.69 0.441992
Target:  5'- gCCCGCgugcccguaucggaCUGGCgAGCCUC--GGCGAGGg -3'
miRNA:   3'- gGGGUG--------------GGCCG-UCGGAGaaCUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 36955 0.69 0.439247
Target:  5'- aCUCCACgCGGCGGCCgucaccggaacgccCUUGcACGAGu -3'
miRNA:   3'- -GGGGUGgGCCGUCGGa-------------GAAC-UGCUCc -5'
18264 5' -59.2 NC_004681.1 + 2010 0.7 0.417641
Target:  5'- aCCCAUCCGGCcgcGGCCagguggucGugGAGGg -3'
miRNA:   3'- gGGGUGGGCCG---UCGGagaa----CugCUCC- -5'
18264 5' -59.2 NC_004681.1 + 1429 0.71 0.366574
Target:  5'- gUCCCACggcuugaGGCAGCC-CUUGucgGCGAGGu -3'
miRNA:   3'- -GGGGUGgg-----CCGUCGGaGAAC---UGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 61539 0.71 0.358491
Target:  5'- gCCCCACUuguUGGCgucGGCUUCcUUGaACGAGGa -3'
miRNA:   3'- -GGGGUGG---GCCG---UCGGAG-AAC-UGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 48037 0.71 0.335763
Target:  5'- cCCCCGCCUGGgGGCucuggaugccuuCUCUcauuggagugugaugGACGAGGa -3'
miRNA:   3'- -GGGGUGGGCCgUCG------------GAGAa--------------CUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 17507 0.73 0.258028
Target:  5'- gCgCCACCCguggGGCGGCCgUCcaugaugUUGACGAGGu -3'
miRNA:   3'- -GgGGUGGG----CCGUCGG-AG-------AACUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 31589 0.74 0.22893
Target:  5'- aCCCCAgCCGGUcaccGCUUCgucaccugGACGAGGg -3'
miRNA:   3'- -GGGGUgGGCCGu---CGGAGaa------CUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 754 0.76 0.173636
Target:  5'- gCCUACCCGGCccuGCCgccCaUGACGGGGu -3'
miRNA:   3'- gGGGUGGGCCGu--CGGa--GaACUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 11380 1.12 0.00046
Target:  5'- cCCCCACCCGGCAGCCUCUUGACGAGGa -3'
miRNA:   3'- -GGGGUGGGCCGUCGGAGAACUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.