miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18265 3' -51.8 NC_004681.1 + 35462 0.66 0.940501
Target:  5'- uCAUA-AGCCACgUGCGcGGUGUGuacgCCg -3'
miRNA:   3'- -GUAUcUCGGUGaACGC-CUACGCua--GG- -5'
18265 3' -51.8 NC_004681.1 + 33507 0.66 0.935312
Target:  5'- ---cGAGCCAauguCUUgGCGccGAUGCGGUUCa -3'
miRNA:   3'- guauCUCGGU----GAA-CGC--CUACGCUAGG- -5'
18265 3' -51.8 NC_004681.1 + 14519 0.66 0.928151
Target:  5'- gCGUAGAuuuucgccucggccGCCuGCUUGCGcuuggcgucggcGAUGCGGUUCu -3'
miRNA:   3'- -GUAUCU--------------CGG-UGAACGC------------CUACGCUAGG- -5'
18265 3' -51.8 NC_004681.1 + 15912 0.66 0.918073
Target:  5'- ---cGAGCCACUgugcgacguUGCGGAgGCcGUCa -3'
miRNA:   3'- guauCUCGGUGA---------ACGCCUaCGcUAGg -5'
18265 3' -51.8 NC_004681.1 + 20568 0.67 0.905188
Target:  5'- ---cGGGCCACUUucgcaGCGGAguuagggcgGCGA-CCa -3'
miRNA:   3'- guauCUCGGUGAA-----CGCCUa--------CGCUaGG- -5'
18265 3' -51.8 NC_004681.1 + 61906 0.67 0.891208
Target:  5'- --aGGAGCUccaGCUUcUGGGUGCGcUCCu -3'
miRNA:   3'- guaUCUCGG---UGAAcGCCUACGCuAGG- -5'
18265 3' -51.8 NC_004681.1 + 62966 0.68 0.868258
Target:  5'- --cAG-GCCGCUUuguaGCGGucGCGGUCCu -3'
miRNA:   3'- guaUCuCGGUGAA----CGCCuaCGCUAGG- -5'
18265 3' -51.8 NC_004681.1 + 53772 0.68 0.849144
Target:  5'- uCAUGGGGUCggugguuccggcgcGCUUGUGGAUGaCGAcaCCg -3'
miRNA:   3'- -GUAUCUCGG--------------UGAACGCCUAC-GCUa-GG- -5'
18265 3' -51.8 NC_004681.1 + 33136 0.69 0.825162
Target:  5'- --aGGAGCCAggUUGaCGGggGCGAUgCCa -3'
miRNA:   3'- guaUCUCGGUg-AAC-GCCuaCGCUA-GG- -5'
18265 3' -51.8 NC_004681.1 + 26755 0.69 0.806423
Target:  5'- gCAUAGAGCC-CggGacaaGGAguucgGCGAUCUg -3'
miRNA:   3'- -GUAUCUCGGuGaaCg---CCUa----CGCUAGG- -5'
18265 3' -51.8 NC_004681.1 + 53587 0.69 0.806423
Target:  5'- uCAUGGGuGCCACUga-GGGUGCGGcgUUCg -3'
miRNA:   3'- -GUAUCU-CGGUGAacgCCUACGCU--AGG- -5'
18265 3' -51.8 NC_004681.1 + 38187 0.7 0.776959
Target:  5'- aCGUAGAGagCGCUaUGCGGAcuUGCGAgcgUCa -3'
miRNA:   3'- -GUAUCUCg-GUGA-ACGCCU--ACGCUa--GG- -5'
18265 3' -51.8 NC_004681.1 + 23485 0.7 0.735607
Target:  5'- aAUGGAGCCACUggcgaacGUGGAgGCGggCa -3'
miRNA:   3'- gUAUCUCGGUGAa------CGCCUaCGCuaGg -5'
18265 3' -51.8 NC_004681.1 + 61870 0.72 0.626469
Target:  5'- aCGUAGAGCUcCUggccgaugGCGGccGCGGUCUg -3'
miRNA:   3'- -GUAUCUCGGuGAa-------CGCCuaCGCUAGG- -5'
18265 3' -51.8 NC_004681.1 + 3222 0.72 0.626469
Target:  5'- ---cGAGCCGCUggGCGc--GCGAUCCg -3'
miRNA:   3'- guauCUCGGUGAa-CGCcuaCGCUAGG- -5'
18265 3' -51.8 NC_004681.1 + 57315 0.72 0.626469
Target:  5'- --aGGAGUgACUuccUGgGGcgGCGAUCCg -3'
miRNA:   3'- guaUCUCGgUGA---ACgCCuaCGCUAGG- -5'
18265 3' -51.8 NC_004681.1 + 11733 1.13 0.001674
Target:  5'- cCAUAGAGCCACUUGCGGAUGCGAUCCg -3'
miRNA:   3'- -GUAUCUCGGUGAACGCCUACGCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.