miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18265 5' -50.3 NC_004681.1 + 15528 0.66 0.965269
Target:  5'- --cAGGUCCAGaCCuACGcCUCGCUCGu -3'
miRNA:   3'- cauUUCGGGUCaGG-UGUuGAGUGAGU- -5'
18265 5' -50.3 NC_004681.1 + 36300 0.66 0.953319
Target:  5'- ----cGCCCcGUCCACGucguAC-CACUCGu -3'
miRNA:   3'- cauuuCGGGuCAGGUGU----UGaGUGAGU- -5'
18265 5' -50.3 NC_004681.1 + 1680 0.66 0.953319
Target:  5'- -gGAGGCCCAGUCaguccCUCAC-CAu -3'
miRNA:   3'- caUUUCGGGUCAGguguuGAGUGaGU- -5'
18265 5' -50.3 NC_004681.1 + 16360 0.66 0.948786
Target:  5'- ----cGCCUGGUCCACcguguACUCGCg-- -3'
miRNA:   3'- cauuuCGGGUCAGGUGu----UGAGUGagu -5'
18265 5' -50.3 NC_004681.1 + 33961 0.66 0.943971
Target:  5'- cUGAGGUCCcGUCCGCGGCcaaggUugUCAc -3'
miRNA:   3'- cAUUUCGGGuCAGGUGUUGa----GugAGU- -5'
18265 5' -50.3 NC_004681.1 + 46594 0.67 0.938869
Target:  5'- -cGAAGCCCAGaCCG--GCcCACUCGc -3'
miRNA:   3'- caUUUCGGGUCaGGUguUGaGUGAGU- -5'
18265 5' -50.3 NC_004681.1 + 49928 0.67 0.927796
Target:  5'- -gAAAGCCCuuGUCCuCGGCggCAUUCGg -3'
miRNA:   3'- caUUUCGGGu-CAGGuGUUGa-GUGAGU- -5'
18265 5' -50.3 NC_004681.1 + 56338 0.68 0.909005
Target:  5'- gGUGucGCCCuc-UUGCAGCUCGCUCGg -3'
miRNA:   3'- -CAUuuCGGGucaGGUGUUGAGUGAGU- -5'
18265 5' -50.3 NC_004681.1 + 49093 0.68 0.887636
Target:  5'- ----uGCCCAG-CCACuuCUCGCUg- -3'
miRNA:   3'- cauuuCGGGUCaGGUGuuGAGUGAgu -5'
18265 5' -50.3 NC_004681.1 + 32758 0.69 0.846626
Target:  5'- cGUucGGCCCGGUCgGCAAUcCGCUgGg -3'
miRNA:   3'- -CAuuUCGGGUCAGgUGUUGaGUGAgU- -5'
18265 5' -50.3 NC_004681.1 + 58901 0.72 0.72665
Target:  5'- gGUGAGGCCCAGcaacUCCugGGCgcgCGcCUCGa -3'
miRNA:   3'- -CAUUUCGGGUC----AGGugUUGa--GU-GAGU- -5'
18265 5' -50.3 NC_004681.1 + 8120 0.75 0.525865
Target:  5'- -gGAAGCCCAGggCCGcCAGCUCGCa-- -3'
miRNA:   3'- caUUUCGGGUCa-GGU-GUUGAGUGagu -5'
18265 5' -50.3 NC_004681.1 + 45084 0.76 0.493681
Target:  5'- -cGAGGCCCucgCCGCGGuCUCGCUCAa -3'
miRNA:   3'- caUUUCGGGucaGGUGUU-GAGUGAGU- -5'
18265 5' -50.3 NC_004681.1 + 11696 1.09 0.004152
Target:  5'- gGUAAAGCCCAGUCCACAACUCACUCAu -3'
miRNA:   3'- -CAUUUCGGGUCAGGUGUUGAGUGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.