miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18266 3' -57.9 NC_004681.1 + 69241 0.66 0.701315
Target:  5'- uGGUGUagccgAGCCGGUaggcgagggaggccaGGGCGCgGGCGa-- -3'
miRNA:   3'- gCCACA-----UCGGCCA---------------CUCGCG-CUGCagu -5'
18266 3' -57.9 NC_004681.1 + 25423 0.66 0.676393
Target:  5'- uCGGgaggGGUCGGUG-GCGUGGUGUCGa -3'
miRNA:   3'- -GCCaca-UCGGCCACuCGCGCUGCAGU- -5'
18266 3' -57.9 NC_004681.1 + 7498 0.67 0.644945
Target:  5'- cCGGUcgaugccugGGCCugGGUGcGCGCGACGUUc -3'
miRNA:   3'- -GCCAca-------UCGG--CCACuCGCGCUGCAGu -5'
18266 3' -57.9 NC_004681.1 + 4958 0.67 0.634428
Target:  5'- aGGcguugGUAGCCaucacugcGGUGGGUaCGGCGUCGa -3'
miRNA:   3'- gCCa----CAUCGG--------CCACUCGcGCUGCAGU- -5'
18266 3' -57.9 NC_004681.1 + 10298 0.67 0.634428
Target:  5'- aGGUGUGGCCGGUgcuccacucgGAGC-CGGggaggccggucgUGUCGa -3'
miRNA:   3'- gCCACAUCGGCCA----------CUCGcGCU------------GCAGU- -5'
18266 3' -57.9 NC_004681.1 + 54743 0.67 0.634428
Target:  5'- gGGUGUAGUCguagGGUGAGCG-GcCGUUc -3'
miRNA:   3'- gCCACAUCGG----CCACUCGCgCuGCAGu -5'
18266 3' -57.9 NC_004681.1 + 10274 0.67 0.62391
Target:  5'- cCGGU---GCCGGaUGAGCugauCGACGUCGc -3'
miRNA:   3'- -GCCAcauCGGCC-ACUCGc---GCUGCAGU- -5'
18266 3' -57.9 NC_004681.1 + 32024 0.67 0.596615
Target:  5'- gGGUGUcggcacGGCCGGUGugauccugggcaagcAGCGCaaggaaGGCGUCc -3'
miRNA:   3'- gCCACA------UCGGCCAC---------------UCGCG------CUGCAGu -5'
18266 3' -57.9 NC_004681.1 + 12413 0.68 0.581986
Target:  5'- uCGGUG-AGCCGGUGAcggacgaggacgGCGaaguGACGaUCAc -3'
miRNA:   3'- -GCCACaUCGGCCACU------------CGCg---CUGC-AGU- -5'
18266 3' -57.9 NC_004681.1 + 12996 0.69 0.520366
Target:  5'- uCGGcacGaAGCCGGUGuGgGUGugGUCAc -3'
miRNA:   3'- -GCCa--CaUCGGCCACuCgCGCugCAGU- -5'
18266 3' -57.9 NC_004681.1 + 14492 0.69 0.510329
Target:  5'- aGGgcgcgcugGUGGCCGGUGcuGGCGCGAgcaaggugaaGUCGa -3'
miRNA:   3'- gCCa-------CAUCGGCCAC--UCGCGCUg---------CAGU- -5'
18266 3' -57.9 NC_004681.1 + 5636 0.69 0.490505
Target:  5'- cCGGUGUgggcacgcAGCUGGUGAGCuucgcCGACGaCGa -3'
miRNA:   3'- -GCCACA--------UCGGCCACUCGc----GCUGCaGU- -5'
18266 3' -57.9 NC_004681.1 + 67474 0.7 0.461465
Target:  5'- aGGgg-AGCgCGGUGAGCGgGACGa-- -3'
miRNA:   3'- gCCacaUCG-GCCACUCGCgCUGCagu -5'
18266 3' -57.9 NC_004681.1 + 48521 0.7 0.446352
Target:  5'- gGGUGgcGCacugccaauacuucaCGGUcGAGCGCGACGgCAg -3'
miRNA:   3'- gCCACauCG---------------GCCA-CUCGCGCUGCaGU- -5'
18266 3' -57.9 NC_004681.1 + 51306 0.7 0.415182
Target:  5'- ----aUGGCCGGUGAGUccGcCGACGUCAu -3'
miRNA:   3'- gccacAUCGGCCACUCG--C-GCUGCAGU- -5'
18266 3' -57.9 NC_004681.1 + 18210 0.72 0.363571
Target:  5'- cCGGUGccUGGCCGG-GGGCGcCGAUGcCGg -3'
miRNA:   3'- -GCCAC--AUCGGCCaCUCGC-GCUGCaGU- -5'
18266 3' -57.9 NC_004681.1 + 54388 0.72 0.363571
Target:  5'- gGGUGUGGaguucgaGGUGgucgacgucaAGCGCGACGUCc -3'
miRNA:   3'- gCCACAUCgg-----CCAC----------UCGCGCUGCAGu -5'
18266 3' -57.9 NC_004681.1 + 17926 0.73 0.316579
Target:  5'- uGGUGaGGCCGGUGccuuGCGCGGCcgccgcguugauGUCGg -3'
miRNA:   3'- gCCACaUCGGCCACu---CGCGCUG------------CAGU- -5'
18266 3' -57.9 NC_004681.1 + 27324 0.73 0.309206
Target:  5'- uGGUGUucacGGCCaGGagGGGCGCGACGcCGg -3'
miRNA:   3'- gCCACA----UCGG-CCa-CUCGCGCUGCaGU- -5'
18266 3' -57.9 NC_004681.1 + 13077 0.97 0.006359
Target:  5'- gCGGUGUAGCCGGUGAGCGC-ACGUCAg -3'
miRNA:   3'- -GCCACAUCGGCCACUCGCGcUGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.