miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18266 5' -55.6 NC_004681.1 + 13683 0.66 0.794018
Target:  5'- -uUGGCGUgGCCGCcCGcGGCCUUg- -3'
miRNA:   3'- gcACUGCAaCGGCGaGUcCCGGAAag -5'
18266 5' -55.6 NC_004681.1 + 67329 0.66 0.794018
Target:  5'- --cGACcugGCCGUgucgCAGGGCCUg-- -3'
miRNA:   3'- gcaCUGcaaCGGCGa---GUCCCGGAaag -5'
18266 5' -55.6 NC_004681.1 + 36872 0.66 0.788258
Target:  5'- --cGGCGUUGaucaggucuauugcaUCGCUCAGGGUCa--- -3'
miRNA:   3'- gcaCUGCAAC---------------GGCGAGUCCCGGaaag -5'
18266 5' -55.6 NC_004681.1 + 65216 0.66 0.754624
Target:  5'- uGUGGCG--GCCGUacuUCAGGGCgCcUUCc -3'
miRNA:   3'- gCACUGCaaCGGCG---AGUCCCG-GaAAG- -5'
18266 5' -55.6 NC_004681.1 + 33321 0.66 0.754624
Target:  5'- cCGgGACGUUcGCCGUcCAGGGCa---- -3'
miRNA:   3'- -GCaCUGCAA-CGGCGaGUCCCGgaaag -5'
18266 5' -55.6 NC_004681.1 + 52305 0.67 0.734162
Target:  5'- -aUGGCGggGCCGUUCuuGGCCguggaUUUCg -3'
miRNA:   3'- gcACUGCaaCGGCGAGucCCGG-----AAAG- -5'
18266 5' -55.6 NC_004681.1 + 54412 0.67 0.727943
Target:  5'- gGUGGCGUcgaugacgacggaugUGCCGCUCuugagguGGGCg---- -3'
miRNA:   3'- gCACUGCA---------------ACGGCGAGu------CCCGgaaag -5'
18266 5' -55.6 NC_004681.1 + 51235 0.68 0.627644
Target:  5'- --gGugGUUGCUcauucaCUCAGGGCCUUc- -3'
miRNA:   3'- gcaCugCAACGGc-----GAGUCCCGGAAag -5'
18266 5' -55.6 NC_004681.1 + 67354 0.69 0.584586
Target:  5'- --cGGCGUUGCgGUgcggCGGGGCCa--- -3'
miRNA:   3'- gcaCUGCAACGgCGa---GUCCCGGaaag -5'
18266 5' -55.6 NC_004681.1 + 51510 0.69 0.563253
Target:  5'- uCGUGGCGUUGagCGCggAGGGCacgUUCu -3'
miRNA:   3'- -GCACUGCAACg-GCGagUCCCGga-AAG- -5'
18266 5' -55.6 NC_004681.1 + 13041 1.09 0.001378
Target:  5'- gCGUGACGUUGCCGCUCAGGGCCUUUCc -3'
miRNA:   3'- -GCACUGCAACGGCGAGUCCCGGAAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.