miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18267 3' -59.9 NC_004681.1 + 16160 0.66 0.542645
Target:  5'- gGGCGGcagucugcguugcGGCGGAuGCGGugacaGCgGCGGCGc -3'
miRNA:   3'- aCCGCUa------------CCGCCU-CGCU-----UGgUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 65345 0.66 0.577413
Target:  5'- aGGCGAUGGCuuucacgaGGuGCGGcagGCCGCuGuCGg -3'
miRNA:   3'- aCCGCUACCG--------CCuCGCU---UGGUGcC-GC- -5'
18267 3' -59.9 NC_004681.1 + 8624 0.66 0.577413
Target:  5'- cUGGcCGAUGGCcgcgGGGGCGGucucaccguCCGCgaaGGCGc -3'
miRNA:   3'- -ACC-GCUACCG----CCUCGCUu--------GGUG---CCGC- -5'
18267 3' -59.9 NC_004681.1 + 45034 0.67 0.474523
Target:  5'- -cGCGGUGGCGGcuccaccgcgugggGGCGAGCUcuuUGGCc -3'
miRNA:   3'- acCGCUACCGCC--------------UCGCUUGGu--GCCGc -5'
18267 3' -59.9 NC_004681.1 + 30777 0.67 0.526519
Target:  5'- gGGCcguGAUGGaa-GGCGAgcuugACCGCGGCGu -3'
miRNA:   3'- aCCG---CUACCgccUCGCU-----UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 32207 0.67 0.516531
Target:  5'- cGGCaaccUGGUGGAGCaGGCCaucgcaGCGGCa -3'
miRNA:   3'- aCCGcu--ACCGCCUCGcUUGG------UGCCGc -5'
18267 3' -59.9 NC_004681.1 + 43819 0.67 0.516531
Target:  5'- cGuGCGAguucaccgagGGCGGcGGUGuACUGCGGCGg -3'
miRNA:   3'- aC-CGCUa---------CCGCC-UCGCuUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 33426 0.67 0.487051
Target:  5'- gGGCGGgugcccUGGaCGGcgaacgucccGGCGuacACCGCGGCGc -3'
miRNA:   3'- aCCGCU------ACC-GCC----------UCGCu--UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 69012 0.67 0.522515
Target:  5'- cGGUGgcGGCGGccgugacgauggucAGCGccucgauggcgucGGCCGCGGCc -3'
miRNA:   3'- aCCGCuaCCGCC--------------UCGC-------------UUGGUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 12194 0.67 0.516531
Target:  5'- -aGCGAgacGCGcGGGCGGACCuCGGCc -3'
miRNA:   3'- acCGCUac-CGC-CUCGCUUGGuGCCGc -5'
18267 3' -59.9 NC_004681.1 + 26231 0.67 0.510575
Target:  5'- cGGCGAUgcccgcccccuacgcGGUGGGGCaugacGGACUccuCGGCGg -3'
miRNA:   3'- aCCGCUA---------------CCGCCUCG-----CUUGGu--GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 30162 0.67 0.500713
Target:  5'- cGGCGcgGccGCGGAGUGGACCuacgccaagaacccuGaCGGCa -3'
miRNA:   3'- aCCGCuaC--CGCCUCGCUUGG---------------U-GCCGc -5'
18267 3' -59.9 NC_004681.1 + 2914 0.67 0.495814
Target:  5'- cUGGgGGccUGGCuGGGCGAcggcaccGCCACGcGCGc -3'
miRNA:   3'- -ACCgCU--ACCGcCUCGCU-------UGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 38204 0.67 0.4774
Target:  5'- aGGUuGUGGaUGGGGCGGccgaagacgucCCGCGGCGg -3'
miRNA:   3'- aCCGcUACC-GCCUCGCUu----------GGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 45369 0.67 0.4774
Target:  5'- cGGUcacgGGCGGGGCGuccggugcuGCCACGaGCa -3'
miRNA:   3'- aCCGcua-CCGCCUCGCu--------UGGUGC-CGc -5'
18267 3' -59.9 NC_004681.1 + 22288 0.67 0.516531
Target:  5'- gGGCGcccugcccgucAUGGCGcaGGGUGAGCC-CGGUa -3'
miRNA:   3'- aCCGC-----------UACCGC--CUCGCUUGGuGCCGc -5'
18267 3' -59.9 NC_004681.1 + 64348 0.67 0.526519
Target:  5'- cGGCGGUGuGCGGuucGGgGAuuucauGCCAgCGGCc -3'
miRNA:   3'- aCCGCUAC-CGCC---UCgCU------UGGU-GCCGc -5'
18267 3' -59.9 NC_004681.1 + 52310 0.67 0.4774
Target:  5'- cGGgGAUGGCGGGGCcguUCuuGGCc -3'
miRNA:   3'- aCCgCUACCGCCUCGcuuGGugCCGc -5'
18267 3' -59.9 NC_004681.1 + 40590 0.67 0.510575
Target:  5'- gGGCacgauugcuacaucGUGGCGGcGUcGGCCGCGGCGu -3'
miRNA:   3'- aCCGc-------------UACCGCCuCGcUUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 21059 0.68 0.430654
Target:  5'- aGGCaaguGAUGGCGGGaCGAuaaaCACGGCc -3'
miRNA:   3'- aCCG----CUACCGCCUcGCUug--GUGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.