Results 41 - 60 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 26954 | 0.68 | 0.421629 |
Target: 5'- gUGGCGGUGG-GGAcCGGcCCACuGCGg -3' miRNA: 3'- -ACCGCUACCgCCUcGCUuGGUGcCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 27602 | 0.66 | 0.55077 |
Target: 5'- aGGCGccugggucacccucgGUGGCGcuGGCG-GCgGCGGCGg -3' miRNA: 3'- aCCGC---------------UACCGCc-UCGCuUGgUGCCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 27754 | 0.68 | 0.449036 |
Target: 5'- cGGUGAcGcGCGGcAGCGGcgGCaGCGGCGg -3' miRNA: 3'- aCCGCUaC-CGCC-UCGCU--UGgUGCCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 28063 | 0.69 | 0.401312 |
Target: 5'- aGGCGGUGGCGGcaaGAaguccaacgacaaaACCuucaACGGCGg -3' miRNA: 3'- aCCGCUACCGCCucgCU--------------UGG----UGCCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 28141 | 0.8 | 0.076723 |
Target: 5'- cGGCGgcGGCGGAuCGAGCgGCGGCa -3' miRNA: 3'- aCCGCuaCCGCCUcGCUUGgUGCCGc -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 30162 | 0.67 | 0.500713 |
Target: 5'- cGGCGcgGccGCGGAGUGGACCuacgccaagaacccuGaCGGCa -3' miRNA: 3'- aCCGCuaC--CGCCUCGCUUGG---------------U-GCCGc -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 30705 | 0.76 | 0.137925 |
Target: 5'- gUGGCGGUGcgaacucccacauGUGGGGCGAGCUcgACGGCa -3' miRNA: 3'- -ACCGCUAC-------------CGCCUCGCUUGG--UGCCGc -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 30777 | 0.67 | 0.526519 |
Target: 5'- gGGCcguGAUGGaa-GGCGAgcuugACCGCGGCGu -3' miRNA: 3'- aCCG---CUACCgccUCGCU-----UGGUGCCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 32207 | 0.67 | 0.516531 |
Target: 5'- cGGCaaccUGGUGGAGCaGGCCaucgcaGCGGCa -3' miRNA: 3'- aCCGcu--ACCGCCUCGcUUGG------UGCCGc -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 32231 | 0.69 | 0.403927 |
Target: 5'- cUGGuCGuUGGCGuGGGCc-GCCGCGGUGa -3' miRNA: 3'- -ACC-GCuACCGC-CUCGcuUGGUGCCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 33426 | 0.67 | 0.487051 |
Target: 5'- gGGCGGgugcccUGGaCGGcgaacgucccGGCGuacACCGCGGCGc -3' miRNA: 3'- aCCGCU------ACC-GCC----------UCGCu--UGGUGCCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 36396 | 0.68 | 0.430654 |
Target: 5'- gUGGUacGAcgUGGaCGGGGCGAACgGCGGg- -3' miRNA: 3'- -ACCG--CU--ACC-GCCUCGCUUGgUGCCgc -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 37127 | 0.71 | 0.300962 |
Target: 5'- cUGGCGAUGGCcggaaGGAGUGucagcGuuGCGGCa -3' miRNA: 3'- -ACCGCUACCG-----CCUCGCu----UggUGCCGc -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 38204 | 0.67 | 0.4774 |
Target: 5'- aGGUuGUGGaUGGGGCGGccgaagacgucCCGCGGCGg -3' miRNA: 3'- aCCGcUACC-GCCUCGCUu----------GGUGCCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 39929 | 0.68 | 0.449037 |
Target: 5'- gGcGCGGUGcgcGCGGuGCGGuCCACGGUc -3' miRNA: 3'- aC-CGCUAC---CGCCuCGCUuGGUGCCGc -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 40590 | 0.67 | 0.510575 |
Target: 5'- gGGCacgauugcuacaucGUGGCGGcGUcGGCCGCGGCGu -3' miRNA: 3'- aCCGc-------------UACCGCCuCGcUUGGUGCCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 43819 | 0.67 | 0.516531 |
Target: 5'- cGuGCGAguucaccgagGGCGGcGGUGuACUGCGGCGg -3' miRNA: 3'- aC-CGCUa---------CCGCC-UCGCuUGGUGCCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 44691 | 0.7 | 0.361789 |
Target: 5'- gGGUGAguagugcGGCGGccGCGAG-CGCGGCGg -3' miRNA: 3'- aCCGCUa------CCGCCu-CGCUUgGUGCCGC- -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 45034 | 0.67 | 0.474523 |
Target: 5'- -cGCGGUGGCGGcuccaccgcgugggGGCGAGCUcuuUGGCc -3' miRNA: 3'- acCGCUACCGCC--------------UCGCUUGGu--GCCGc -5' |
|||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 45210 | 0.74 | 0.202024 |
Target: 5'- cUGcGCGAcGGCGucggccccggucuuGAGCGAGaCCGCGGCGa -3' miRNA: 3'- -AC-CGCUaCCGC--------------CUCGCUU-GGUGCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home