miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18267 3' -59.9 NC_004681.1 + 45369 0.67 0.4774
Target:  5'- cGGUcacgGGCGGGGCGuccggugcuGCCACGaGCa -3'
miRNA:   3'- aCCGcua-CCGCCUCGCu--------UGGUGC-CGc -5'
18267 3' -59.9 NC_004681.1 + 45210 0.74 0.202024
Target:  5'- cUGcGCGAcGGCGucggccccggucuuGAGCGAGaCCGCGGCGa -3'
miRNA:   3'- -AC-CGCUaCCGC--------------CUCGCUU-GGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 45034 0.67 0.474523
Target:  5'- -cGCGGUGGCGGcuccaccgcgugggGGCGAGCUcuuUGGCc -3'
miRNA:   3'- acCGCUACCGCC--------------UCGCUUGGu--GCCGc -5'
18267 3' -59.9 NC_004681.1 + 44691 0.7 0.361789
Target:  5'- gGGUGAguagugcGGCGGccGCGAG-CGCGGCGg -3'
miRNA:   3'- aCCGCUa------CCGCCu-CGCUUgGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 43819 0.67 0.516531
Target:  5'- cGuGCGAguucaccgagGGCGGcGGUGuACUGCGGCGg -3'
miRNA:   3'- aC-CGCUa---------CCGCC-UCGCuUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 40590 0.67 0.510575
Target:  5'- gGGCacgauugcuacaucGUGGCGGcGUcGGCCGCGGCGu -3'
miRNA:   3'- aCCGc-------------UACCGCCuCGcUUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 39929 0.68 0.449037
Target:  5'- gGcGCGGUGcgcGCGGuGCGGuCCACGGUc -3'
miRNA:   3'- aC-CGCUAC---CGCCuCGCUuGGUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 38204 0.67 0.4774
Target:  5'- aGGUuGUGGaUGGGGCGGccgaagacgucCCGCGGCGg -3'
miRNA:   3'- aCCGcUACC-GCCUCGCUu----------GGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 37127 0.71 0.300962
Target:  5'- cUGGCGAUGGCcggaaGGAGUGucagcGuuGCGGCa -3'
miRNA:   3'- -ACCGCUACCG-----CCUCGCu----UggUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 36396 0.68 0.430654
Target:  5'- gUGGUacGAcgUGGaCGGGGCGAACgGCGGg- -3'
miRNA:   3'- -ACCG--CU--ACC-GCCUCGCUUGgUGCCgc -5'
18267 3' -59.9 NC_004681.1 + 33426 0.67 0.487051
Target:  5'- gGGCGGgugcccUGGaCGGcgaacgucccGGCGuacACCGCGGCGc -3'
miRNA:   3'- aCCGCU------ACC-GCC----------UCGCu--UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 32231 0.69 0.403927
Target:  5'- cUGGuCGuUGGCGuGGGCc-GCCGCGGUGa -3'
miRNA:   3'- -ACC-GCuACCGC-CUCGcuUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 32207 0.67 0.516531
Target:  5'- cGGCaaccUGGUGGAGCaGGCCaucgcaGCGGCa -3'
miRNA:   3'- aCCGcu--ACCGCCUCGcUUGG------UGCCGc -5'
18267 3' -59.9 NC_004681.1 + 30777 0.67 0.526519
Target:  5'- gGGCcguGAUGGaa-GGCGAgcuugACCGCGGCGu -3'
miRNA:   3'- aCCG---CUACCgccUCGCU-----UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 30705 0.76 0.137925
Target:  5'- gUGGCGGUGcgaacucccacauGUGGGGCGAGCUcgACGGCa -3'
miRNA:   3'- -ACCGCUAC-------------CGCCUCGCUUGG--UGCCGc -5'
18267 3' -59.9 NC_004681.1 + 30162 0.67 0.500713
Target:  5'- cGGCGcgGccGCGGAGUGGACCuacgccaagaacccuGaCGGCa -3'
miRNA:   3'- aCCGCuaC--CGCCUCGCUUGG---------------U-GCCGc -5'
18267 3' -59.9 NC_004681.1 + 28141 0.8 0.076723
Target:  5'- cGGCGgcGGCGGAuCGAGCgGCGGCa -3'
miRNA:   3'- aCCGCuaCCGCCUcGCUUGgUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 28063 0.69 0.401312
Target:  5'- aGGCGGUGGCGGcaaGAaguccaacgacaaaACCuucaACGGCGg -3'
miRNA:   3'- aCCGCUACCGCCucgCU--------------UGG----UGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 27754 0.68 0.449036
Target:  5'- cGGUGAcGcGCGGcAGCGGcgGCaGCGGCGg -3'
miRNA:   3'- aCCGCUaC-CGCC-UCGCU--UGgUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 27602 0.66 0.55077
Target:  5'- aGGCGccugggucacccucgGUGGCGcuGGCG-GCgGCGGCGg -3'
miRNA:   3'- aCCGC---------------UACCGCc-UCGCuUGgUGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.