miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18267 3' -59.9 NC_004681.1 + 62891 0.68 0.438872
Target:  5'- aGGCGGuucaccuUGGCGuuGGCGAuaGCCAacuCGGCGg -3'
miRNA:   3'- aCCGCU-------ACCGCc-UCGCU--UGGU---GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 21059 0.68 0.430654
Target:  5'- aGGCaaguGAUGGCGGGaCGAuaaaCACGGCc -3'
miRNA:   3'- aCCG----CUACCGCCUcGCUug--GUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 14486 0.69 0.395253
Target:  5'- uUGGCGucGGCGauGCGGuucuCCGCGGCGa -3'
miRNA:   3'- -ACCGCuaCCGCcuCGCUu---GGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 14563 0.7 0.353736
Target:  5'- cGGCGGaGGCGGcGCG---CGCGGCGu -3'
miRNA:   3'- aCCGCUaCCGCCuCGCuugGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 12194 0.67 0.516531
Target:  5'- -aGCGAgacGCGcGGGCGGACCuCGGCc -3'
miRNA:   3'- acCGCUac-CGC-CUCGCUUGGuGCCGc -5'
18267 3' -59.9 NC_004681.1 + 67268 0.68 0.466895
Target:  5'- gUGGCGAUGcGaCGGAcauccauGCGGACUGaGGCGu -3'
miRNA:   3'- -ACCGCUAC-C-GCCU-------CGCUUGGUgCCGC- -5'
18267 3' -59.9 NC_004681.1 + 36396 0.68 0.430654
Target:  5'- gUGGUacGAcgUGGaCGGGGCGAACgGCGGg- -3'
miRNA:   3'- -ACCG--CU--ACC-GCCUCGCUUGgUGCCgc -5'
18267 3' -59.9 NC_004681.1 + 61859 0.7 0.353736
Target:  5'- cUGGcCGAUGGCGGccgcggucugguGGCGcGCgAgGGCGg -3'
miRNA:   3'- -ACC-GCUACCGCC------------UCGCuUGgUgCCGC- -5'
18267 3' -59.9 NC_004681.1 + 14887 0.68 0.458389
Target:  5'- gGGCgccagccuucagGAUGGCcaGGGCGu-CCGCGGCGu -3'
miRNA:   3'- aCCG------------CUACCGc-CUCGCuuGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 69223 0.7 0.345811
Target:  5'- aGGCGAgggaggccagGGCGcGGGCGAG--GCGGCGc -3'
miRNA:   3'- aCCGCUa---------CCGC-CUCGCUUggUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 51606 0.68 0.430654
Target:  5'- aGGUGGUGGCGucGGUGuAGCCGagcUGGCGg -3'
miRNA:   3'- aCCGCUACCGCc-UCGC-UUGGU---GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 39929 0.68 0.449037
Target:  5'- gGcGCGGUGcgcGCGGuGCGGuCCACGGUc -3'
miRNA:   3'- aC-CGCUAC---CGCCuCGCUuGGUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 26954 0.68 0.421629
Target:  5'- gUGGCGGUGG-GGAcCGGcCCACuGCGg -3'
miRNA:   3'- -ACCGCUACCgCCUcGCUuGGUGcCGC- -5'
18267 3' -59.9 NC_004681.1 + 32231 0.69 0.403927
Target:  5'- cUGGuCGuUGGCGuGGGCc-GCCGCGGUGa -3'
miRNA:   3'- -ACC-GCuACCGC-CUCGcuUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 1927 0.69 0.369968
Target:  5'- cGGCG-UGGUGGAGUuuGACCACGuCGa -3'
miRNA:   3'- aCCGCuACCGCCUCGc-UUGGUGCcGC- -5'
18267 3' -59.9 NC_004681.1 + 44691 0.7 0.361789
Target:  5'- gGGUGAguagugcGGCGGccGCGAG-CGCGGCGg -3'
miRNA:   3'- aCCGCUa------CCGCCu-CGCUUgGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 3238 0.66 0.58774
Target:  5'- aGGCccUGGaGGAggGCGAGCCGCugGGCGc -3'
miRNA:   3'- aCCGcuACCgCCU--CGCUUGGUG--CCGC- -5'
18267 3' -59.9 NC_004681.1 + 69012 0.67 0.522515
Target:  5'- cGGUGgcGGCGGccgugacgauggucAGCGccucgauggcgucGGCCGCGGCc -3'
miRNA:   3'- aCCGCuaCCGCC--------------UCGC-------------UUGGUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 33426 0.67 0.487051
Target:  5'- gGGCGGgugcccUGGaCGGcgaacgucccGGCGuacACCGCGGCGc -3'
miRNA:   3'- aCCGCU------ACC-GCC----------UCGCu--UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 45034 0.67 0.474523
Target:  5'- -cGCGGUGGCGGcuccaccgcgugggGGCGAGCUcuuUGGCc -3'
miRNA:   3'- acCGCUACCGCC--------------UCGCUUGGu--GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.